Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03400 ATGGATGGTATTCACGGGGGTGATTCTCGGATACACATCAGTGATGGACAGCATCCTATACATGTGCCATATGTGCAAGAACATGAGCATCATGGACTGCACCATATGAGCAACGGGAATGGGATTGATGAGGATCAGAATGATGGTGGTGATACTAACTGTGGTGGAAGTGAGAGTGTGGAAGGTGATATCCCTTCCAGTCATGGAAATCTCCCTGACAATCACGGTGTAATAATGCATCAAGGGGGTGATGCTGGGGATCAGCTTACGTTGTCTTTTCAGGGCCAAGTTTATGTCTTTGACTCCGTGTCTCCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGCGAAATACCTCCAACCATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACGTCTTCAAAGTCCAATCATGATGAATCTGCATTAGCATTAACAAATTGGGGGCCGAACGAAAACTGGTCAGCAGAGAATAACGGTTCCCAGCAGCAAGATATTGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGCGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGGCGCCACCCATATCTGGACCAATAAAAAATGAGAATAAAAGTGTAGAGGCCAACCAGATAGTCCTTAGAGTTGCAGGAGAAGCTGATGATTCGTCGTGA 903 0.4585 MDGIHGGDSRIHISDGQHPIHVPYVQEHEHHGLHHMSNGNGIDEDQNDGGDTNCGGSESVEGDIPSSHGNLPDNHGVIMHQGGDAGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESALALTNWGPNENWSAENNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAPPISGPIKNENKSVEANQIVLRVAGEADDSS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03400 300 Pfam CCT motif 150 192 IPR010402 GO:0005515
Phac8g03400 300 CDD ZnF_GATA 225 281 IPR000679 GO:0006355|GO:0043565
Phac8g03400 300 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Phac8g03400 300 Gene3D - 216 283 IPR013088 GO:0006355|GO:0008270
Phac8g03400 300 Pfam tify domain 87 116 IPR010399 -
Phac8g03400 300 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Phac8g03400 300 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Phac8g03400 300 MobiDBLite consensus disorder prediction 40 64 - -
Phac8g03400 300 ProSiteProfiles GATA-type zinc finger domain profile. 220 279 IPR000679 GO:0006355|GO:0043565
Phac8g03400 300 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Phac8g03400 300 MobiDBLite consensus disorder prediction 32 76 - -
Phac8g03400 300 SMART tify_2 82 117 IPR010399 -
Phac8g03400 300 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Phac8g03400 300 PANTHER GATA TRANSCRIPTION FACTOR 28 26 277 IPR045280 GO:0006355
Phac8g03400 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03400 Phac-Chr8 41839602 41845352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03400 1 299 Tify Gene Family AT1G51600 63.192 2.25e-134 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac8g03400 CCT 8.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03400 - - pvu:PHAVU_008G254600g 630.172