Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03399 ATGAAAATCCTGGGATATTTTTCTCAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGCGAAATACCTCCAACCATGCCTACCATGCCAGTGTCTCCTCACCATAATAACCGGGGATTTACTGGTACTCCGCAAAAATTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGGTTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGGTATACTGTTCGGAAAGAAGTAGCATTAAGGATGCAAAGGAATAAAGGTCAGTTTACGTCTTCAAAGTCCAATCATGATGAATCTGCATTAGCATTAACAAATTGGGGGCCGAACGAAAACTGGTCAGCAGAGAATAACGGTTCCCAGCAGCAAGATATTGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGACGCGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGTCTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGGCGCCACCCATATCTGGACCAATAAAAAATGAGAATAAAAGTGTAGAGGCCAACCAGATAGTCCTTAGAGTTGCAGGAGAAGCTGATGATTCGTCGTGA 609 0.4483 MKILGYFSQVQAVLLLLGGREIPPTMPTMPVSPHHNNRGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDESALALTNWGPNENWSAENNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAPPISGPIKNENKSVEANQIVLRVAGEADDSS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03399 202 ProSiteProfiles CCT domain profile. 52 94 IPR010402 GO:0005515
Phac8g03399 202 Pfam CCT motif 52 94 IPR010402 GO:0005515
Phac8g03399 202 ProSitePatterns GATA-type zinc finger domain. 128 155 IPR000679 GO:0006355|GO:0043565
Phac8g03399 202 CDD ZnF_GATA 127 183 IPR000679 GO:0006355|GO:0043565
Phac8g03399 202 PANTHER GATA TRANSCRIPTION FACTOR 28 9 179 IPR045280 GO:0006355
Phac8g03399 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 174 - -
Phac8g03399 202 ProSiteProfiles GATA-type zinc finger domain profile. 122 181 IPR000679 GO:0006355|GO:0043565
Phac8g03399 202 SMART GATA_3 122 175 IPR000679 GO:0006355|GO:0043565
Phac8g03399 202 Pfam GATA zinc finger 128 164 IPR000679 GO:0006355|GO:0043565
Phac8g03399 202 Gene3D - 118 186 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03399 Phac-Chr8 41839602 41845352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03399 9 201 Tify Gene Family AT1G51600 66.000 1.97e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac8g03399 CCT 4.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03399 - - pvu:PHAVU_008G254600g 400.208