Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03386 ATGCACTGCAGTGTGGTCCTCTCTTCTCTTTTTTTTTTTTCAGTTTTCATGGCCAAAAGATCGCAGAAAACCCTCAAGAACACTGACACCAACAACACTGCCAAACGCACACGCAAAACAGTTCCAAGAGATTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGTCTGTTGCTTTTTGCATTTGTTCTGTCTTTTGTATCTAGGTATGATTTGAGGGCATATGATGATGAAGAAGCTGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGTCAAGATACCATTCTCAATTTCCCATTAACAAATTATGAGGAGATGCTCAAGGAAATGGAGGGTCAATCAAAAGAAGAATATATTGGATCCTTGAGAAGAAAAAGTAGTGGATTCTCTCGAGGAGTTTCAAAATACAGAGGTGTAGCAAGGTACTCCAACCTTCCTCTGTTTTGTTGGAAAATGCTAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTTGGCAACAAATACCTATATCTTGGAACTTATGCATGACATAACAGAACATGTTTGCATATGTTACAATGTTGTATTTGCAGCTACACAGGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAGTACAGAGGAGCTAATGCTGTTACAAACTTTGATGTGAGCCGCTACATCAATTGGCCAGGTCCTAAAACTGAAGAAGAGAATCAAAATGTTCCTGTAAATGAAAATGTAAACTCTAATGCTGAAATTGAACTAGGGTTTGTTTCACATGAACTTGGTTCAAAAAGTGATGAGATCACAACAGAGGATGCAGCACAGTCTTCAGAGTCAAACCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAGAGTCAGGGACCAGACATCTACACTGAAAATGATGATATCATTTTTGGTGACTTAGGTTCATTTGGGGCATCAATTTTTCATTACGAGCTTGATGTTTAG 1086 0.4079 MHCSVVLSSLFFFSVFMAKRSQKTLKNTDTNNTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGLLLFAFVLSFVSRYDLRAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEMLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARYSNLPLFCWKMLDTTIMEDGKLELAGSLATNTYILELMHDITEHVCICYNVVFAATQEEAAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKTEEENQNVPVNENVNSNAEIELGFVSHELGSKSDEITTEDAAQSSESNPSRRTFPEDIQTIFESQGPDIYTENDDIIFGDLGSFGASIFHYELDV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03386 361 MobiDBLite consensus disorder prediction 26 50 - -
Phac8g03386 361 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 29 280 - -
Phac8g03386 361 Gene3D AP2/ERF domain 52 134 IPR036955 GO:0003700|GO:0006355
Phac8g03386 361 Gene3D AP2/ERF domain 224 257 IPR036955 GO:0003700|GO:0006355
Phac8g03386 361 SMART rav1_2 52 138 IPR001471 GO:0003700|GO:0006355
Phac8g03386 361 SUPERFAMILY DNA-binding domain 230 257 IPR016177 GO:0003677
Phac8g03386 361 Pfam AP2 domain 52 124 IPR001471 GO:0003700|GO:0006355
Phac8g03386 361 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Phac8g03386 361 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Phac8g03386 361 ProSiteProfiles AP2/ERF domain profile. 52 132 IPR001471 GO:0003700|GO:0006355
Phac8g03386 361 SUPERFAMILY DNA-binding domain 99 133 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03386 Phac-Chr8 41779215 41782014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03386 48 259 AP2-EREBP Transcription Factor Family AT5G57390 50.704 2.29e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac8g03386 AP2 4.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03386 K09285 - gmx:100819898 414.075