LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g03314	ATGGAGAACAAATCAAGCATCTTGATGCAAAAATATGAACTAGGAAGGTTACTAGGAAAAGGAACTTTTGGAAAAGTCTACTATGGCCGTTGTACAGTAACTAACCAAAGTGTGGCCATTAAAGTGATTGACAAGAATAAGGTTATAAGAACTGGACATGCTGATCTCATTAAAAGGGAAATATCTATTATGAGACTGGTCAAGCACCCAAATGTTATTGAGCTTTTTGAGGTCATGGCCACGAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAGGGAGGAGAACTGTTTAAGAAGGTGGCCAAAGGAAAGCTCAAAGAAGATGTTGCACACAAATATTTTCGGCAGCTTGTGAATGCAGTGGATTTTTGTCACAGTAGAGGTGTGTGCCATAGAGATATAAAGCCAGAGAACATTTTGTTGGATGAAAATGATAATTTGAAGATCTCTGATTTCGGGTTAAGTGCCCTGGCTGAATCCAAACACCAAGACGGCTTGTTGCACACAGCCTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAAGGTTACGATGGTGCCAAAGCTGACATTTGGTCATGCGGGGTAGTTTTGTTTGTCTTACTAGCAGGTTACTTTCCTTTTCAAGATCCTAATTTGATGGTGATGTATAGGAAGATAAGCAAGGCAGAGTTTACATGCCCTAGATGGTTCCCAGCAGGAGTTCGGAGGCTATTGAGCAAGATGTTGGATCCAAATCCAAGCACTAGGATTTCCATGGATAAGATTAAGCAATGTTCTTGGTTTATGAAGTGGCAAAATGGTAGACCGACAACACAAGAAGGGGAAAACAGGAGTGTCTCTCCTTCAATTACAAATCATTCTGAACAATGTGGTGATGGAAGTAATGGTTTAGCAGCAGAAGCAAGGGAAGAGTCAGCTGTGCCAGTAAGTATAAATGCCTTCGACATAATCTCCCTTTCACCTGGGTTTAATCTTTGTGGATTCTTTGAAGACAGCTTTCAGAAAAGGGAAGCAAGATTTACTTCAAGACAACCAGCATCTGTCATCATCTTCAGGCTGGAAGAAATGGCCAATGAGCTGAAGATGAAAATAAAGAAAAGGGCTGCTGGTTTGTTGAAAATGGAGGGCCTTCATGAAGGTAGGAAGGGGATCTTATCAATTGATGCAGAGATCTTCGAAGTTACTCCACTTCTGCACTTGGTGGAGGTGAAGAAATCAAATGGAGATACGCTGGAATATGAGAAAATACTAAAAGAAGCCATAAGGCCTGCTCTTAAAGATATTGTTTGGGTATGGCAAGGTGACCAACAACAGTAA	1332	0.4099	MENKSSILMQKYELGRLLGKGTFGKVYYGRCTVTNQSVAIKVIDKNKVIRTGHADLIKREISIMRLVKHPNVIELFEVMATKSKIYFVMEYAKGGELFKKVAKGKLKEDVAHKYFRQLVNAVDFCHSRGVCHRDIKPENILLDENDNLKISDFGLSALAESKHQDGLLHTACGTPAYVAPEVIKRKGYDGAKADIWSCGVVLFVLLAGYFPFQDPNLMVMYRKISKAEFTCPRWFPAGVRRLLSKMLDPNPSTRISMDKIKQCSWFMKWQNGRPTTQEGENRSVSPSITNHSEQCGDGSNGLAAEAREESAVPVSINAFDIISLSPGFNLCGFFEDSFQKREARFTSRQPASVIIFRLEEMANELKMKIKKRAAGLLKMEGLHEGRKGILSIDAEIFEVTPLLHLVEVKKSNGDTLEYEKILKEAIRPALKDIVWVWQGDQQQ*	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g03314	443	MobiDBLite	consensus disorder prediction	272	297	-	-
	Phac8g03314	443	Gene3D	Transferase(Phosphotransferase) domain 1	2	313	-	-
	Phac8g03314	443	MobiDBLite	consensus disorder prediction	272	302	-	-
	Phac8g03314	443	FunFam	Non-specific serine/threonine protein kinase	311	435	-	-
	Phac8g03314	443	CDD	STKc_SnRK3	11	265	-	-
	Phac8g03314	443	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g03314	443	FunFam	Non-specific serine/threonine protein kinase	5	306	-	-
	Phac8g03314	443	Pfam	NAF domain	313	371	IPR004041	GO:0007165
	Phac8g03314	443	SUPERFAMILY	Protein kinase-like (PK-like)	8	284	IPR011009	-
	Phac8g03314	443	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Phac8g03314	443	Gene3D	Kinase associated domain 1, KA1	314	436	-	-
	Phac8g03314	443	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g03314	443	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-
	Phac8g03314	443	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	4	431	-	-
	Phac8g03314	443	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g03314	443	CDD	CIPK_C	317	431	-	-
	Phac8g03314	443	ProSiteProfiles	NAF domain profile.	311	335	IPR018451	GO:0007165
	Phac8g03314	443	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g03314	Phac-Chr8	41355129	41357904	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g03314	1	443	CBL-interacting serine-threonine protein kinases	AT5G58380	64.758	0.0	602

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Phac8g03314		Pkinase	6e-75	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g03314	-		K07198	gmx:100779316	781.556