Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03301 ATGGAAGAGGTATGCGTGGGTCAGACGGCGGGAGTAGACTTTGACCTAGGGGCTATCTCTGCTAATGTCTGCGCCCATGCATGGAAAAGCAGCTTTATATATACTGACCGGGCCAAAGTCGTGGTGGATATTGAGACCAACTCGAACCTTACGAACAACCGGTTCGGACTGGGCCAAAAAGACTCTAGGGAGGCCCATTTTGAAAAGGAGTGGGAACCTAATACAGTCCAAGTGCAGGATGATGGGGGAGAGAGTGGGTCAGGGCCTTTGATGGAGCCCTCGTCAAGTGAGGAAGTTAGGCGACAACCCACGAACGACTCTCAAGGGGCACGAACGGAAGAGAGTGAACAGAAGGAAGAATGCAGTGCATTCTCTGACGGGAACTGCAGGACAAATCAAATGAAGGAGAGAACCATGGCAACAAATAAGAGGGAGGACAACATAAATGATGCTGAAGTAGAATCACAAAGGCCTAGGATTGGTGATAAGGCTGAAGGGGGTACCACCATTGAACCAGAAGAGACGCATATTCCAGAGCTGCCCCTTTCTTCATCCCGACAGCGAAAGACAAAAGGACTCATCGACTTGGGGGATTCTTTCTATTTGATGCCTAGACGGTCTGAGAGAATCAGTAAGAGACAATTCCAATATGGATCCTCATCACACATCAGAGGAGGAGGTGCATGTGGTTATGGGGATTTGACGAGTGAGGGATATGGATCTGATACTACAGCTCTAAGCACTGCTTTGTTCAACAATGGATTGTCTTGTGGGGCATGTTTTGCAATTAGATGTGTTAATGATCCAAAATGGTGCAAGCCTGGGTCGGTTGTTGTTACTGCTACAAACTTCTGTCCTCCCAGCAGTAGTGGTCCTGGTTGGTGCAACCCTCCTGCACAACACTTCAACTTGGCAGAATCAGCCTTCCTCAAAATAGCTCAAGTGCCTTGTGTGAGAAAAGGGGGAATAAGGTTCACAATTAATGGACACTCTTACTTCAACCAGGTTCTGATCACCAACGTCGCGGGTGCAGGGGATGTCCATGCAGTCTCCATCAAAGGGTCCAAAACAGGTTGGCAATCTATGTCAAGGAACTGGGGGCAAAATTGGCAGAGCAACTCCTACCTCAATGGACAAAGCCTCTCTTTTCTAGTCACCACCAGTGACCGTAGAACTGTCACAAGCTACAACGTGGCACCATATAATTGGCAATTTGGTCAGACCTTTGAGGGTCGTCAGATTTAG 1245 0.4827 MEEVCVGQTAGVDFDLGAISANVCAHAWKSSFIYTDRAKVVVDIETNSNLTNNRFGLGQKDSREAHFEKEWEPNTVQVQDDGGESGSGPLMEPSSSEEVRRQPTNDSQGARTEESEQKEECSAFSDGNCRTNQMKERTMATNKREDNINDAEVESQRPRIGDKAEGGTTIEPEETHIPELPLSSSRQRKTKGLIDLGDSFYLMPRRSERISKRQFQYGSSSHIRGGGACGYGDLTSEGYGSDTTALSTALFNNGLSCGACFAIRCVNDPKWCKPGSVVVTATNFCPPSSSGPGWCNPPAQHFNLAESAFLKIAQVPCVRKGGIRFTINGHSYFNQVLITNVAGAGDVHAVSIKGSKTGWQSMSRNWGQNWQSNSYLNGQSLSFLVTTSDRRTVTSYNVAPYNWQFGQTFEGRQI* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03301 414 PRINTS Expansin signature 238 252 IPR002963 GO:0009664
Phac8g03301 414 PRINTS Expansin signature 321 333 IPR002963 GO:0009664
Phac8g03301 414 PRINTS Expansin signature 397 413 IPR002963 GO:0009664
Phac8g03301 414 PRINTS Expansin signature 368 389 IPR002963 GO:0009664
Phac8g03301 414 PRINTS Expansin signature 333 354 IPR002963 GO:0009664
Phac8g03301 414 MobiDBLite consensus disorder prediction 89 110 - -
Phac8g03301 414 Pfam Expansin C-terminal domain 323 400 IPR007117 -
Phac8g03301 414 PRINTS Expansin/Lol pI family signature 397 411 IPR007118 GO:0005576
Phac8g03301 414 PRINTS Expansin/Lol pI family signature 359 373 IPR007118 GO:0005576
Phac8g03301 414 PRINTS Expansin/Lol pI family signature 225 243 IPR007118 GO:0005576
Phac8g03301 414 PRINTS Expansin/Lol pI family signature 247 265 IPR007118 GO:0005576
Phac8g03301 414 CDD DPBB_EXPA_N 226 323 - -
Phac8g03301 414 Gene3D - 204 323 IPR036908 -
Phac8g03301 414 Gene3D - 324 414 IPR036749 -
Phac8g03301 414 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 226 323 IPR007112 -
Phac8g03301 414 PANTHER EXPANSIN-A15 215 413 IPR002963 GO:0009664
Phac8g03301 414 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 332 411 IPR007117 -
Phac8g03301 414 Pfam Lytic transglycolase 243 323 IPR009009 -
Phac8g03301 414 SUPERFAMILY Barwin-like endoglucanases 225 340 IPR036908 -
Phac8g03301 414 SMART dpbb_1 243 325 IPR007112 -
Phac8g03301 414 FunFam Expansin 322 414 - -
Phac8g03301 414 SUPERFAMILY PHL pollen allergen 319 411 IPR036749 -
Phac8g03301 414 MobiDBLite consensus disorder prediction 66 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03301 Phac-Chr8 41240174 41247950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03301 215 414 Expansin Gene Family AT2G03090 63.889 3.23e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03301 - K20628 atri:130818026 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g03301 8 41240174 41247950 Phac8g03301 8 41240174 41247950 ECH
Phac6g01069 6 14569980 14572590 Phac8g03301 8 41240174 41247950 ECH
Phac6g01069 6 14569980 14572590 Phac8g03301 8 41240174 41247950 PCT