Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03273 ATGTCCGTACACTCCACAGTGAACCTCCACCCCATGAACCTCGCCACCCCAAATTCTCATTTTGATGATAACCCACCATGCAAAACCAAGACCAAAACCCAAAAGAGGCTCCTTCGGATCATAATCACCGACCACGACGCCACTGATTCTGAATCCGACGACGAACAGCGACAAAACAACCCAAAAACAAGAAAAGTCAAGAGGGAAATTACCCAAATCAGTATGCACCTTCCTCTCCCTGACAACTCCTTTTCTTCTTGTTCCTATTCTTCTGCTTCAGCTTCTGTTTCCACTTGTTCCTCCGAACAAGCCTCAAAGTGCAGAAGACCCAAAAAACCTCCACCATCCTCCGAAGCGGCCAACGGCCGCAGTAAGTTCCGCGGCGTCCGTCAGCGGCCGTGGGGGCGGTGGGCCGCCGAGATCCGCGACCCCAACCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACCGAGTACGACAAAGCCGCCGTCAAACTCAAGGGGCCCAACGCCGTCACCAACTTCCCCCTCACAACGCCGCCTCCGGCGGCGGCGTCTCCCTTCGCCGCAATCGACAGCTTCAGCACCGACGGTGGCGCGTCGTATTCCGACTTGGTGGCCTCGCCCACGTCCGTTCTAACCTACGACTGCGACTCGACGCCGTTCGACAGTTTCCCTTACGGCAACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGTCTAGCGGACGTTGACGTCGCGCTGACGTGTCATCACGGGAAGGAGGAGGAGGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAAGTGGCCTTACTAA 846 0.5733 MSVHSTVNLHPMNLATPNSHFDDNPPCKTKTKTQKRLLRIIITDHDATDSESDDEQRQNNPKTRKVKREITQISMHLPLPDNSFSSCSYSSASASVSTCSSEQASKCRRPKKPPPSSEAANGRSKFRGVRQRPWGRWAAEIRDPNRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTTPPPAAASPFAAIDSFSTDGGASYSDLVASPTSVLTYDCDSTPFDSFPYGNVDALGFHIDAPLSLADVDVALTCHHGKEEEEAFDEFDLDEFMKWPY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03273 281 SMART rav1_2 125 188 IPR001471 GO:0003700|GO:0006355
Phac8g03273 281 ProSiteProfiles AP2/ERF domain profile. 125 182 IPR001471 GO:0003700|GO:0006355
Phac8g03273 281 MobiDBLite consensus disorder prediction 1 66 - -
Phac8g03273 281 MobiDBLite consensus disorder prediction 1 24 - -
Phac8g03273 281 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 192 - -
Phac8g03273 281 FunFam Ethylene-responsive transcription factor 2 124 183 - -
Phac8g03273 281 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Phac8g03273 281 PIRSF PTI6 7 281 IPR017392 GO:0003700
Phac8g03273 281 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Phac8g03273 281 CDD AP2 124 182 IPR001471 GO:0003700|GO:0006355
Phac8g03273 281 Pfam AP2 domain 124 174 IPR001471 GO:0003700|GO:0006355
Phac8g03273 281 PRINTS Ethylene responsive element binding protein signature 148 164 IPR001471 GO:0003700|GO:0006355
Phac8g03273 281 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
Phac8g03273 281 MobiDBLite consensus disorder prediction 37 66 - -
Phac8g03273 281 MobiDBLite consensus disorder prediction 100 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03273 Phac-Chr8 41003170 41006093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03273 28 231 AP2-EREBP Transcription Factor Family AT4G27950 42.584 8.71e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phac8g03273 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03273 K13434 - gmx:100800489 384.415