Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03253 ATGGCAAAGAGTCGCACAAGCAACACTTATGAAGAGGCTAGAAAACAAAGACTTGAAGAGAACAAGAAGAGGTTTGAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGAATGAGATCACAAGTTCTGCAAAGAAGAGACAGCATCATGTTCCTAAACCGAAACCTAAGAATACAAATGGTGAAGTGGAACCTAGGCGATCTTCACGTGTGCGAAACCCAGTTGCTTCTTACCAGGAAGATGTGAGCATACACCTTCCAGCTTTGCGGAAGAGGTCAAGATCAAATTCTTCGACATGGGGAAGTTACATTGCGAGGCCTTTAGATGAAATCAAAGAAGCTACAGAAGAGGAAAGACTCTGTGCTCTGGAGGCCGCGGAGGCACTCCAAATCAATATGAACTCTTCAAATCCCTCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGCCTTCCTTCTAAATTTTGTGAGGAACATCTTCCAAAAACTGTATTTGACATGGTTTTAGAAGATGAAAATGGCTCAGAATACGAGGCTGTTTACATTGGCAAGAGAAGTGGACTTAGCGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGAGATGCCCTTGTTTTTGAATTGGTTGAAGCTTCCAGATTTAAGATTTATATTGTTAGAGCATTTCCAAATTTAGTTGAAGAAAAGGGAAAGGATATTTTAGTTGAAGAAGGAAATATGCATTCAACCAAAGTACCAAAAGCTAAATGTAATCTTGAGTCAGAATCCAAGACTAAAAAGCCAAGGCAGGCAGCTGCATATGAAACTAATGAATCAGAGAGTTCTCAGGAGCATATTGACAAAGAAGTCAAACCACAGGGTCTAAATTCAACTAAGCAAACTAAAATCTCTAAGAAAAAAACACAGAAGAAATGTATACTTCCGGCTACTGCAGATTCAAAAGGAAAAGTGCAAATGAAAACTCAGAAACCAAAGGTGTCTCTGGAGCTTTCAAACAAGACAAGGAAGTCAAAGGCTATCAATGCAATTGATGACTCAGTCGAGTTAGAGAAAAAAAGTTTTGCTCGTGATGCTGATAGGAAGTTAGAAAAGGTTGAACTAGTTGAAGAAGCAAGCAAATGTGTGATACAGAAAACTAGAAAAAAAACAGCTCCCAAGTTTTTCAGAAAGAAAGCATAA 1206 0.3897 MAKSRTSNTYEEARKQRLEENKKRFEDLGISRISKNLNEITSSAKKRQHHVPKPKPKNTNGEVEPRRSSRVRNPVASYQEDVSIHLPALRKRSRSNSSTWGSYIARPLDEIKEATEEERLCALEAAEALQINMNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVFDMVLEDENGSEYEAVYIGKRSGLSGGWRAFALDHKLDDGDALVFELVEASRFKIYIVRAFPNLVEEKGKDILVEEGNMHSTKVPKAKCNLESESKTKKPRQAAAYETNESESSQEHIDKEVKPQGLNSTKQTKISKKKTQKKCILPATADSKGKVQMKTQKPKVSLELSNKTRKSKAINAIDDSVELEKKSFARDADRKLEKVELVEEASKCVIQKTRKKTAPKFFRKKA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03253 401 MobiDBLite consensus disorder prediction 1 74 - -
Phac8g03253 401 MobiDBLite consensus disorder prediction 257 275 - -
Phac8g03253 401 ProSiteProfiles B3 DNA-binding domain profile. 140 231 IPR003340 GO:0003677
Phac8g03253 401 Coils Coil 8 28 - -
Phac8g03253 401 MobiDBLite consensus disorder prediction 253 309 - -
Phac8g03253 401 Pfam B3 DNA binding domain 140 228 IPR003340 GO:0003677
Phac8g03253 401 SMART B3_2 140 231 IPR003340 GO:0003677
Phac8g03253 401 MobiDBLite consensus disorder prediction 8 30 - -
Phac8g03253 401 Gene3D - 114 231 IPR015300 -
Phac8g03253 401 MobiDBLite consensus disorder prediction 55 69 - -
Phac8g03253 401 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 42 230 IPR044837 -
Phac8g03253 401 SUPERFAMILY DNA-binding pseudobarrel domain 135 229 IPR015300 -
Phac8g03253 401 CDD B3_DNA 138 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03253 Phac-Chr8 40767573 40771075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03253 10 230 B3 DNA Binding Superfamily AT5G58280 51.613 4.31e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phac8g03253 B3 4.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03253 - - vra:106764146 628.246