LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g03244	ATGTCATATTTTGGGCTTCAGTGGAGGACTAAGTTTAGGAAAGCCATGAATAGGGCGGATAATGATGCTAGTACAAGGGTTATTGATTCACTTATTAATTATGAGACTGTCAAATATTTTAATAATGAAGTGTATGAAGCTGATAATTATGACAAGTACCTGAAGAGATACGAAGATGCTGCTCTGAAAACCCAACGAAGTCTTGCTTTGTTGAACTTTGGTCAAAATATTATATTTAGTACTGCTCTTTCATCAGCAATGGTGCTGTGCTCTCATGGGATCATGGATGGAACGATGACTATTGGTGATTTGGTAATGGTGAATGGACTTCTCTTCCAACTATCTCTTCCACTTAATTTCCTTGGTAGTGTTTATCGTGAGACTATACAGAGTTTAGTTGACATGAAATCCATGTTTCAGTTACTTGAGGAAAGAGCAGACATTAGGGATAAAGAAAATGCACAGCCTCTTAGATTTAATGGGGGGAGTATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGATTATCGTTTGTTTTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTTAGATTGCTATTCAGGTTCTTTGATCCTAATTCTGGAAGTATAAAGATAGATAATCAAGATATTCGGGACATAACCCTTGAGAGTTTGCGGAAGTCCATTGGTGTTGTTCCACAAGATATTGTACTTTTTAATGATACTATATTTCACAACATTCACTACGGTCGGCTTTCTGCAACAAAGGAGGAGGTCTATGAAGCTGCTCAGCAAGCAGCAATTCATAACACTATCATGAATTTTCCCGATAAATATTCAACTGTTGTCGGAGAGAGAGGGCTCAAGTTAAGTGGTGGTGAGAAGCAACGTATTGCCTTGGCTCGTTCATTCTTAAAAGCACCTGCAATTCTATAG	969	0.3787	MSYFGLQWRTKFRKAMNRADNDASTRVIDSLINYETVKYFNNEVYEADNYDKYLKRYEDAALKTQRSLALLNFGQNIIFSTALSSAMVLCSHGIMDGTMTIGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLVDMKSMFQLLEERADIRDKENAQPLRFNGGSIQFENVHFSYLTERKILDGLSFVLPAGKSVAIVGTSGSGKSTILRLLFRFFDPNSGSIKIDNQDIRDITLESLRKSIGVVPQDIVLFNDTIFHNIHYGRLSATKEEVYEAAQQAAIHNTIMNFPDKYSTVVGERGLKLSGGEKQRIALARSFLKAPAIL*	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g03244	322	Gene3D	-	159	322	IPR027417	-
	Phac8g03244	322	ProSitePatterns	ABC transporters family signature.	301	315	IPR017871	GO:0005524\|GO:0016887
	Phac8g03244	322	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1	130	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Phac8g03244	322	Pfam	ABC transporter	180	322	IPR003439	GO:0005524
	Phac8g03244	322	SUPERFAMILY	ABC transporter transmembrane region	3	144	IPR036640	GO:0005524\|GO:0016020
	Phac8g03244	322	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	9	322	IPR039421	-
	Phac8g03244	322	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	153	322	IPR027417	-
	Phac8g03244	322	CDD	ABC_6TM_ATM1_ABCB7	2	138	-	-
	Phac8g03244	322	Gene3D	ABC transporter type 1, transmembrane domain	1	151	IPR036640	GO:0005524\|GO:0016020
	Phac8g03244	322	Pfam	ABC transporter transmembrane region	3	117	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g03244	Phac-Chr8	40695836	40712332	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g03244	21	322	Calmodulin-binding Proteins	AT2G36910	35.691	1.19e-48	172

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g03244	K05662		-	gmx:100779975	592.808