Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03173 ATGGTTTTGTCATGGACCAGAGGGAGAGTGTTCCGGCGTGCTCGGAAGGGGAAGGAGTTGAGTTCTGGTAGCGATTTGGAGATAGAGATTGCGATCCCCACGCACTTCCGGTGCCCGGTAACCTTGGACATGATGAAAGACCCCGTGACGATGTCCACGGGAATAACCTACGACAGAGACAGCATCGAGAAGTGGATCGAGTCCGGGAACCGCACGTGCCCGGTTACGAAGACGGAGTTGACCAGCTTCGAGATGATCCCGAACCACTCCATTCGGAGGATGATTCAGGATTGGTGCGTGGAGCACCGTTCCCACGGGATCGAACGGATCCCCACTCCTCGGATCCCCGTGACCCCGTTCGAGGTTACTGACACGTGTACGAGGATCCTGTCGGCGGCGCAGCACGGGGACGAGAACAAGTGTGTGGAGTTGGTGAGGAAGATTAAGGCATGGGGGAAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGTCAACGGTGCTGCTCTAGCACTAGCTAATGCGTTTAACATTTTCTCACGTGGGGTGGTTGAGAAGAACGTGGTTGTGTTGGATGAGATTCTGGGGGCGTTGACGTGGATGCGTCCTCTTTCTGAAGATGGTAGATCCGTGTTGGGGTCAGTGAGTTCTATTGGTTGCATGGTTTGGTTCATGAATGGTAAACAATTGGCGACAAGGCAGAACGCTGCTTTGTTGCTTAAGGAAATGCGCGTTGAGGCGTTGGTGAAATGTGAAGGGGTTTTTGAAGCTTTGGTTAACATGGTTAAGGAGCCTGTTGGGAATGCTTCCTCGAAGGCATGTTTGTCAACGATTTTTAAGTTGTTGGTTAATTCTTCAGGAAGTAATAGAGGTGTGGCTCGCGAGAGATTCGTGGAGTTGGGTTTGGTTTCGGTGTTGTTGGAGCTTCTTGTTGATGCTGAGAGAGGGGTGTGTGAGAAGGCTTTGGGGGTGTTGGATTGTCTTTGTGATTGTAAACAAGGGGTGGAGATGGCTAAAAGTAATGCTTTGACTTTGCCTCTTGTGATTAAGAAGCTGTTGAGGGTGTCTGAGTTGAGTTCAAGCTTTGCTGTTTCGGTTCTTTGGAAGGTTTGTGACAAGACAGAAGAAGGGGTGTTGATTGAGGCTCTTCAAATTGGGGTGTTTCATAAACTCCTTGTTTTGTTGCAAGTGGGTTGTGCTGAGGGCACCAAAGAGAAGGCTACGGAGTTGTTGAAGTTATTTAATGGTTGCAGGAGCAAAGCTGAGTGTGTTGACTCCTCCTTGGATTTCAAGCACTTGAAGAACCCTTCTAATTGA 1314 0.4977 MVLSWTRGRVFRRARKGKELSSGSDLEIEIAIPTHFRCPVTLDMMKDPVTMSTGITYDRDSIEKWIESGNRTCPVTKTELTSFEMIPNHSIRRMIQDWCVEHRSHGIERIPTPRIPVTPFEVTDTCTRILSAAQHGDENKCVELVRKIKAWGKESERNKRCIVVNGAALALANAFNIFSRGVVEKNVVVLDEILGALTWMRPLSEDGRSVLGSVSSIGCMVWFMNGKQLATRQNAALLLKEMRVEALVKCEGVFEALVNMVKEPVGNASSKACLSTIFKLLVNSSGSNRGVARERFVELGLVSVLLELLVDAERGVCEKALGVLDCLCDCKQGVEMAKSNALTLPLVIKKLLRVSELSSSFAVSVLWKVCDKTEEGVLIEALQIGVFHKLLVLLQVGCAEGTKEKATELLKLFNGCRSKAECVDSSLDFKHLKNPSN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03173 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Phac8g03173 437 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Phac8g03173 437 SUPERFAMILY RING/U-box 27 108 - -
Phac8g03173 437 CDD RING-Ubox_PUB 33 85 IPR045210 -
Phac8g03173 437 Gene3D - 125 423 IPR011989 -
Phac8g03173 437 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Phac8g03173 437 SUPERFAMILY ARM repeat 126 400 IPR016024 -
Phac8g03173 437 PANTHER WDSAM1 PROTEIN 29 423 IPR045185 GO:0061630
Phac8g03173 437 FunFam RING-type E3 ubiquitin transferase 26 108 - -
Phac8g03173 437 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03173 Phac-Chr8 40211968 40213904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03173 24 435 U-box Gene Family AT5G37490 45.952 3.47e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03173 - - gmx:100795913 733.406