Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03086 ATGCGGCGGAACAGTCCTGCATACTACAGTCCTCCGCGGCGAGGATACGGTGGCCGAGGAGGGGGTTCCAATAGGAGGGGATTCGGTGGAGGCAGGCGCAGGGACACCAGCAATGGAAGCCTCTTGGTTCGGAACATTCCTCTCGATTGCAGACCTGAGGAGCTGCGGGTTCCTTTCGAGCGATTCGGACCTGTTCGCGATGTTTACATACCCAAGGATTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTATGATGCCTCAGAGGCACAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGAAGAGACAAGAAAAAGACCAGAGGAGATGCGACACAGGACCAGAGCCAGAGGACCAGCAGGCTATGGAGGACGTAGGTCTTCTCATTACGGGCGTTCTCGATCTCGCTCAGTTACTAGATCACGCTCACCACCTTATCATTCTGGTTCTAGAAGTCGATATCGTTCAAGGTCCTATTCTCCTGCTCCAAGACGGCAAAGTGATTACTCTGTTTCCCCTAGGAGGCAAGCAGAGCATCCTAGATCACCAAGAGGTCCTCCCCGGGAGCGAGATGGTGATCAAAAGCGTAGATCTTATTCTCCTGGATATGGCAATGGTATTGAACAGAATCAAAGCAATGGATATGCTGAGAAATCTATGTACAAGTCTGAAGCTGATCGAGGCCAGTGGAAGTCATCGCGATCACCCGTTGGATCTAGATCAAGATCTGCTGACCTGTCACCAAGGCGTGGAAGATGA 804 0.5075 MRRNSPAYYSPPRRGYGGRGGGSNRRGFGGGRRRDTSNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREISVVVAEETRKRPEEMRHRTRARGPAGYGGRRSSHYGRSRSRSVTRSRSPPYHSGSRSRYRSRSYSPAPRRQSDYSVSPRRQAEHPRSPRGPPRERDGDQKRRSYSPGYGNGIEQNQSNGYAEKSMYKSEADRGQWKSSRSPVGSRSRSADLSPRRGR* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03086 267 MobiDBLite consensus disorder prediction 218 233 - -
Phac8g03086 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Phac8g03086 267 SMART rrm1_1 40 113 IPR000504 GO:0003723
Phac8g03086 267 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 33 248 - -
Phac8g03086 267 Gene3D - 30 175 IPR012677 -
Phac8g03086 267 MobiDBLite consensus disorder prediction 1 38 - -
Phac8g03086 267 MobiDBLite consensus disorder prediction 118 267 - -
Phac8g03086 267 MobiDBLite consensus disorder prediction 186 212 - -
Phac8g03086 267 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 32 173 - -
Phac8g03086 267 MobiDBLite consensus disorder prediction 152 185 - -
Phac8g03086 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Phac8g03086 267 SUPERFAMILY RNA-binding domain, RBD 35 146 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03086 Phac-Chr8 39660336 39663914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03086 7 101 Eukaryotic Initiation Factors Gene Family AT3G11400 35.789 5.99e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03086 K12900 - gmx:100804294 397.897