Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03068 ATGTCTTCACATTGGTGTTTCCGGTGCAACAAATTCGTCAGAGTAAGGAGACAGGAAATGCCGATGTGTCCAGATTGTGACAGTGGATTCGTTGAAGAGGTCGACTCTTCCAGCCGCCCTGTCCATGTCGAAACACGCCGCCGTAGGTTCCCCACGGCGGCGGCCATGTACATGATCGGCCACCGTTCCGGTAACTCTGACCGCAATCCCCGGTCCTCTCGCCATCATCATTGCAGAACCGTCGTCGGTGACCCGTCTCCGCTCAACCCGGTCATCATGCTCCGCGGCGAGGGGTCAAGCCACGAACGTAGCTCTAGCTTCGACCTTTTCTACGACGACGGCGCCGGTACCGGTCTCCGACCACTCCCTCCGAGGATGTCGGAGTTTCTTCTCGGAACAGGCTTTGAGCGTGTGATGGACCAACTTTCCGACGTGGAGTCTAACTCCGGGTCTGGGAGGCACGACCAGCACCACGCGCCGGCGTCTAAAGCTGCCGTGGAGGCCTTGCCGTCGGTTGAGATAAACGCGTCCCACATGGTGACTGAGTCACACTGCGCGGTCTGCAAAGAGCCTTTTGAGCTTTGCACCGTAGCGACAGAAATGCCATGCAAACACTTATACCATCCAGAATGCATCTTACCGTGGCTTGCGATTCGGAACTCATGCCCCGTGTGCCGCAAAGAGTTGCCTGTTGAGAACACACGCGCGGGGTTGGAGCGTGTGGAGGAGGGGGACGAGAACAACGTGGGGTTGACGATTTGGCGGTTACCGGGTGGAGGGTTTGCGGTGGGAAGGTTGGGGAGAAGAGAGGGTGAGAGAGAGGTTAATGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTAAACTTTAACAACTTTGTTATGGGTGAACCCAGAAGGATTTCATGGTCGGTTTCGGAGTCTCGAGGGAGGAGAAGAGGTGGCGCGTTTAGAAGAATGTTTAACGGTTTGTTTGGTTGCTTGAGAGGTGGTGGGGTAGGGCCTCAACGTTCTTCTAGTTCTGGTTCTTCGAGAACCGCGACGAGTTCCAGTGTTAGGGCTTCGCGTCCTAACATTGGTCCTTCTTTATCTTCGCGTAGAACTTGGTCAATGGATGTCAATGGTGGAACCAGACCATGGTAA 1143 0.5521 MSSHWCFRCNKFVRVRRQEMPMCPDCDSGFVEEVDSSSRPVHVETRRRRFPTAAAMYMIGHRSGNSDRNPRSSRHHHCRTVVGDPSPLNPVIMLRGEGSSHERSSSFDLFYDDGAGTGLRPLPPRMSEFLLGTGFERVMDQLSDVESNSGSGRHDQHHAPASKAAVEALPSVEINASHMVTESHCAVCKEPFELCTVATEMPCKHLYHPECILPWLAIRNSCPVCRKELPVENTRAGLERVEEGDENNVGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGLNFNNFVMGEPRRISWSVSESRGRRRGGAFRRMFNGLFGCLRGGGVGPQRSSSSGSSRTATSSSVRASRPNIGPSLSSRRTWSMDVNGGTRPW* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03068 380 MobiDBLite consensus disorder prediction 334 372 - -
Phac8g03068 380 Pfam Ring finger domain 184 226 IPR001841 -
Phac8g03068 380 Pfam Protein of unknown function (DUF1117) 249 355 IPR010543 -
Phac8g03068 380 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Phac8g03068 380 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Phac8g03068 380 MobiDBLite consensus disorder prediction 332 380 - -
Phac8g03068 380 FunFam E3 ubiquitin-protein ligase RING1-like 147 232 - -
Phac8g03068 380 SUPERFAMILY RING/U-box 165 231 - -
Phac8g03068 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Phac8g03068 380 MobiDBLite consensus disorder prediction 67 81 - -
Phac8g03068 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 230 - -
Phac8g03068 380 MobiDBLite consensus disorder prediction 62 82 - -
Phac8g03068 380 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03068 Phac-Chr8 39488072 39490015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03068 121 247 C3H Transcription Factor Family AT5G01980 40.157 3.02e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03068 K11982 - gmx:100789228 548.125