Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03054 ATGGGGTCTCACTATCAGTACTGGATGCATGTGAGGAGAGAACAAATCATGAATTCACTCCCACATAAAGCACCAATTATTGGAGATGTCAGGAAGAACAATTGGGAAGAAAGGGCTTTTGCTGAAGACGCAACTAGGAGGAGTCTTGGTTGGAGCGTGTGGCCTCCAAGATCTTACTCTTGCACCTTTTGTAAGAGAGAGTTCAGGTCTGCTCAAGCTCTTGGGGGTCACATGAATATCCACAGAAGGGACAGGGCTAGGCTCAAACAAAACCTCAGAGCTCATCACAATTATGAACCCTTTTCTCATCATTACCATCACCAAAATGATGACACCATCAAATCCTCATTAGGTAATAATCATCATTTTTCTGCACCACTCTCCACCCAGTTAAATTGTGGTCTTACTCATCCTCATAACTACTCTAGCCAAGCAACTACAATTTCAACAACCAGATCACTCTCATGTATATCCACACAACAAAACTCTGGTCAGCATAAATTTTCACCTTCTTCTTCTTCTTCTTCCTTTATCTTGGGACAATTGGGGTCTCCTAATTCAGAACAAGAAAGGGTGGTCAAAGCAAAGGAGTACAATTTTAAAGGCTTGGGATGTAGTAATTTTGTTGAAACAAGTTTGTCTGTGGGTCTGACTTCTATGTTTGGCCAAAATTCATCACCAACCGTTCCTTGTGGGGACACACCCAAAATCAGTTGCAAGAGACTAAAAAATACTATTTCTTCTCTTCCTCTTTTCCTCAGACCATGTTCAAAGGACAAAGGCCTGGCTTTTCAACCTGTGGAAATCTCACTTGGACTTCATCATGGAATCGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAGCACAAAGTTAAGTAG 882 0.4184 MGSHYQYWMHVRREQIMNSLPHKAPIIGDVRKNNWEERAFAEDATRRSLGWSVWPPRSYSCTFCKREFRSAQALGGHMNIHRRDRARLKQNLRAHHNYEPFSHHYHHQNDDTIKSSLGNNHHFSAPLSTQLNCGLTHPHNYSSQATTISTTRSLSCISTQQNSGQHKFSPSSSSSSFILGQLGSPNSEQERVVKAKEYNFKGLGCSNFVETSLSVGLTSMFGQNSSPTVPCGDTPKISCKRLKNTISSLPLFLRPCSKDKGLAFQPVEISLGLHHGIEDLDLELRLGKQHKVK* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03054 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Phac8g03054 293 SMART c2h2final6 59 81 IPR013087 -
Phac8g03054 293 PANTHER OS07G0101800 PROTEIN 31 289 - -
Phac8g03054 293 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Phac8g03054 293 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Phac8g03054 293 Gene3D Classic Zinc Finger 55 116 - -
Phac8g03054 293 Pfam C2H2-type zinc finger 59 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03054 Phac-Chr8 39370573 39371713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g03054 36 90 C2H2 Transcription Factor Family AT5G06070 72.727 1.10e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phac8g03054 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03054 - - vun:114195124 334.339