Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g03035 ATGCCCCTTCTTCTCCATCTCTCTGTCATTTTCATTCCTCTTCCTCCCTTTTCCCTTCCCTCATCTTCTCTCTCACAACATTGCCTTTTCCTCCTTATGGCTCCCTCTTCAGATGTCAACCATCTTTCTCATCCATGCATATACGGGGATTATATGTCTCCTCGCTCGGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAACTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAGGAAAGCATGGTTTGGGGAGCTCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGGCATGCAATGGCACTTTCTTCAGCCGAAGATTTGAAGAGACCAAACGCCCATCAAGGATATAGTTGGGGACAAGACACTGGAGACGATTACTCAAAGGCACCTTTGGATACCCTTAGCTCATCTGCACACCCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAAATAATGTATGGAAATTGTTTGGGGTGCATGGATACGTATTTTCACCCAAATTGCTTTCGCTGTCATTCCTGTGGGTACCCCATCACTGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCGTATCATAAATCCTGCTTTAAAGAAATGACTCATCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCAGCAGGCTTGATAGAGTACAGGTGCCACCCCTTTTGGTCCCAAAAATATTGTCCATCTCATGAATATGATAATACAGCTCGCTGCTGTAGTTGTGAAAGATTGGAGCCTCTGAACATAAAATACTATAGACTAGAAGATGGACGCAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGCGATTGCCAGCCTCTTTACCATTCTATCAGAGATTATTATGAAGGAATGCAGATGAGAATAGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCTACACTTACCAGAAACAAGGGGTTTATGCCTTTCAGAGGAGCAGACTGTGACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATCGACTGATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGCGAAGTTACAGCAATTCTTGTCCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGGCTGGCTACGCCTTAAAGGTTACCGCAACCTTAACCCTGAAGTAGAGGAAGGCATTTGTCAAGTTCTTTCCTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCAACATCCACAGCTTCTGCTTCTTCCTCCTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTACGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGATTTTTTCCAGTGTAA 1614 0.4343 MPLLLHLSVIFIPLPPFSLPSSSLSQHCLFLLMAPSSDVNHLSHPCIYGDYMSPRSERKSGFMKWLSKLFRGGSNRGRGGRHLHEPAEESMVWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYSWGQDTGDDYSKAPLDTLSSSAHPPFAPTPFYPHEYRRICGGCNQEIMYGNCLGCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKEMTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPLNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFLHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTASASSSSSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGFFPV* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g03035 537 CDD LIM_DA1 174 226 - -
Phac8g03035 537 PANTHER PROTEIN DA1-RELATED 2 63 536 IPR045218 -
Phac8g03035 537 ProSitePatterns LIM zinc-binding domain signature. 174 208 IPR001781 -
Phac8g03035 537 Pfam LIM domain 174 228 IPR001781 -
Phac8g03035 537 Pfam Protein DA1 323 531 IPR022087 -
Phac8g03035 537 ProSiteProfiles LIM domain profile. 172 232 IPR001781 -
Phac8g03035 537 SMART lim_4 173 225 IPR001781 -
Phac8g03035 537 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 199 - -
Phac8g03035 537 MobiDBLite consensus disorder prediction 462 482 - -
Phac8g03035 537 FunFam Protein DA1-related 2 162 227 - -
Phac8g03035 537 Gene3D Cysteine Rich Protein 161 231 - -
Phac8g03035 537 MobiDBLite consensus disorder prediction 462 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g03035 Phac-Chr8 39248173 39253027 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac8g03035 DA1-like 2.7e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g03035 - - gmx:100784976 1011.91