Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02957 ATGATAAAAAGGCCTTCCCATAGGTTTCATTCTCCCTCATATTTGCTCAATCGAGGTCTTCTCGATTTTTCTCTCTTCAAAAAACAACGCTCTCTTGCAACCAACATACACTTCTTATACTCTTACTCCCCTCTCAAATCCACTTCAAAAGGAATTTGGGATATGTGTAGTGATTCAAAGAGTAAGCTTTCTTCCCCGAGGCTGGTGATGGAGAATAATGTTCAGAAGCAGAATCTTGATGGTTTCTGCAACTTCTCGGCTTTGCTTGAACTGTCTGCATCCGATGATTTTGAAGGTTTCAAAAGAGAAGTAGATGAGAAGGGCTTAGATGTCAACGAGGCCGGATTTTGGTATGGTAGAAGGATTGGGTCCAAGAAGATGGGATCTGAAACGAGGACCCCCCTCATGATTGCTTCTTTGTTTGGAAGCACTAGAGTTCTCAAGTATATTCTTGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGACAGGGCCACTGCTCTCCATTGTGCTGCCGCTGGGGGCTCTGAATCCTCACCCGAGATTGTCAAGCTCTTGCTAGATGCTGGGGCGGATGCTGAAGCCCTTGATGCTACTGGAAACAAGCCGGCTAATCTGGTTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGTTCCTGAGGGGTGGTGAAAGAGATGAAGTGATGAGTCAGGAGATGGAGCTGCAGATGTTCTCCGCTCCTTTCTCAGCAAAAGAAGGTGGTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCAGATATCAACAGCGATGTGTACGGAAGCGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCAGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCATGCCCAGAATTCCGCAAAGGGGCATGCCAAAAGGGTGATTCCTGTGAGTATGCTCACGGTGTTTTTGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTTTGCAAGGACGAGACTGGCTGCAGTAGAAAAGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCCACTGGCTCAGCTATGCCTTCACCAAAATCCTATTCTTCTACTGCACTAGACATGACAGCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTGCCCATGCCAACTGTTTCAACCCCACCCATGTCTCCACTGGCAGCAGCTTCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTTACTCCACCATCCCTGCAGCTCCCTGGTAGCCGACTCAAGGCTGCTTTGAGTGCCAGGGATCTGGAGATGGAGATGGAACTGTTCGGTCTAGATAGTCCAGCTCGCCAACAACAACAGCAGCAGCAACAGTTGATAGAAGAGATTGCCAGGATCTCTTCCCCGTCTTTCCGCAACAAGGAATTCAATAGGATTGCTGATTTGAATCCAACCAACCTTGATGACCTGTTAGCCTCTGCTGACCCTTCTGTGTTATCACAACTTCATGGACTTTCTGTGCAGACTTCAACACCCACCCAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCGCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAACTCCAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGCTTCATCGATCGTGGAGCTGCAATCCACCATCTTGGCATGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCTACTGGGAAACTGGATTGGGGTGTCAACGGAGATGAGCTAAACAAGCTGAGGAGATCTGCTTCATTTGGGTTCAGAAACAACGGGGTAAGTGCTTCCCCCATAGCTCACCCAGAACATGTTGAGCCAGATGTCTCATGGGTTCATTCCTTGGTTAAGGATGTTCCTTCTGAGAGGTCCGACATGTTTGGTGGTGAGAGGCAACAGTATGATCTGAGTAAAGAGATGCTGCCTCCGTGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2208 0.4896 MIKRPSHRFHSPSYLLNRGLLDFSLFKKQRSLATNIHFLYSYSPLKSTSKGIWDMCSDSKSKLSSPRLVMENNVQKQNLDGFCNFSALLELSASDDFEGFKREVDEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTRVLKYILEAGTVDVNRACGSDRATALHCAAAGGSESSPEIVKLLLDAGADAEALDATGNKPANLVAPAFDSSSKSRRKAMELFLRGGERDEVMSQEMELQMFSAPFSAKEGGEKKEGSDKKEYPVDISLPDINSDVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSTALDMTAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGNLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELFGLDSPARQQQQQQQQLIEEIARISSPSFRNKEFNRIADLNPTNLDDLLASADPSVLSQLHGLSVQTSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAAIHHLGMSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRRSASFGFRNNGVSASPIAHPEHVEPDVSWVHSLVKDVPSERSDMFGGERQQYDLSKEMLPPWVEQLYIEQEQMVA* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02957 735 PANTHER UNKEMPT FAMILY MEMBER 90 697 IPR045234 -
Phac8g02957 735 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 350 IPR000571 GO:0046872
Phac8g02957 735 ProSiteProfiles Ankyrin repeat profile. 165 200 IPR002110 GO:0005515
Phac8g02957 735 SMART ANK_2a 130 160 IPR002110 GO:0005515
Phac8g02957 735 SMART ANK_2a 165 197 IPR002110 GO:0005515
Phac8g02957 735 Gene3D - 326 388 - -
Phac8g02957 735 ProSiteProfiles Zinc finger C3H1-type profile. 325 352 IPR000571 GO:0046872
Phac8g02957 735 SUPERFAMILY Ankyrin repeat 81 207 IPR036770 -
Phac8g02957 735 ProSiteProfiles Ankyrin repeat region circular profile. 165 199 - -
Phac8g02957 735 Gene3D - 86 230 IPR036770 -
Phac8g02957 735 SMART c3hfinal6 360 383 IPR000571 GO:0046872
Phac8g02957 735 SMART c3hfinal6 325 351 IPR000571 GO:0046872
Phac8g02957 735 FunFam Zinc finger CCCH domain-containing protein 66 283 351 - -
Phac8g02957 735 Pfam Ankyrin repeats (3 copies) 128 197 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02957 Phac-Chr8 38412444 38415607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02957 85 730 C2H2 Transcription Factor Family AT5G12850 39.745 2.16e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac8g02957 Ank_2 1.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02957 - - gmx:100783376 1142.1