Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02940 ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGCCACCACCGCCACGCCCTCCACTCCCAGCCAAACATCTAACACTTCCAACAGCACCAATGACACCACCAACAACAAAAGTACTCGTAAATGCAAAGGAAAAGGTGGCCCTGACAACAACAAATTTAGGTACCGCGGCGTTAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACGCGCAAGTGGCTAGGCACCTTCGCCACCGCTGAAGACGCCGCCAGAGCCTACGACCGCGCCGCCCTCATCCTCTATGGTTCCCGGGCCCAGCTCAATCTCGAACCCTCCGGTTCCTCTCCTCACTCTTCCTCATCTCGTACCACCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCCCGCCCCACAGGCTTCGCTTTCAATTTTCCCTTCCACGCCGCCGCCCTGCCCTACCCTTGCGCCGGCGTGTATGCCGCCACTTTCAATTACACCCAGCAGGTGCTGTGCCCTAATGAGAATAGTAATAATACAGTGCATGTTCATCATCATCATCATCGTCGTCCTGAGGAAGTGGTGCAAGTGTCACATGCTCTATCAACATCATATCAAAATTCGGAATCTGATGTGAGTTTAGGTGGGAATAATACTACTGCTGATAGTTCCAGTAGATCAACCTCGTACCAAAGGCATGGTCACCCGGATAATAACCGTGTGCATGCTCAACATAGCGATTTATCGAAGCATCAGCAACATCAGAACAGCGTTGTCGATGGAGTGGATTCCGCTGTGGGTTCGGGTGAATCTTCTCAGGTAAATATGGAGGCTTCGGTGGATCCGGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCTTCTGTCTGGCCGTTGGCGAGTGAGGATGATTACAGTGGCAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCCTTTAGAGAAATTTTAG 990 0.5212 MASLQPQPQETKPTATTATPSTPSQTSNTSNSTNDTTNNKSTRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLEPSGSSPHSSSSRTTSSTQTLRPLLPRPTGFAFNFPFHAAALPYPCAGVYAATFNYTQQVLCPNENSNNTVHVHHHHHRRPEEVVQVSHALSTSYQNSESDVSLGGNNTTADSSSRSTSYQRHGHPDNNRVHAQHSDLSKHQQHQNSVVDGVDSAVGSGESSQVNMEASVDPDLSLVGTVGLGSSSSVWPLASEDDYSGSLWDYNDPFFFDPLEKF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02940 329 FunFam Ethylene-responsive transcription factor 2 57 115 - -
Phac8g02940 329 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Phac8g02940 329 MobiDBLite consensus disorder prediction 253 274 - -
Phac8g02940 329 MobiDBLite consensus disorder prediction 41 59 - -
Phac8g02940 329 MobiDBLite consensus disorder prediction 207 274 - -
Phac8g02940 329 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Phac8g02940 329 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Phac8g02940 329 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 24 278 - -
Phac8g02940 329 MobiDBLite consensus disorder prediction 113 135 - -
Phac8g02940 329 MobiDBLite consensus disorder prediction 236 252 - -
Phac8g02940 329 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Phac8g02940 329 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Phac8g02940 329 MobiDBLite consensus disorder prediction 207 235 - -
Phac8g02940 329 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Phac8g02940 329 MobiDBLite consensus disorder prediction 1 60 - -
Phac8g02940 329 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Phac8g02940 329 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Phac8g02940 329 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02940 Phac-Chr8 38257803 38260052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02940 43 322 AP2-EREBP Transcription Factor Family AT2G40220 43.648 3.04e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Phac8g02940 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02940 K09286 - gmx:100779779 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g02940 8 38257803 38260052 Phac8g02940 8 38257803 38260052 ECH