Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02923 ATGGTGCAAAGAAAAAGGCGATTAGATCAAACCAAGCATCCATTCAATTCTCACCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAGATTGAGGCAGGAGTCCTGTCTATGCATTTTGTAGACAACCATTATATGACTATGGAGAAAGGACCCTTGTCAGACATTAGGATAAGTTCAAGGAAAGCTACTTTATCTGATTGCTCCCGTTTTCTGCGTCCTGGAATTGACATATGTGTGCTATCTGCCCCTCAACAATCTAATGATTCAGATGCAATTGTTATTGACCCAGTCTGGACTGATGCTAAAATAAGCTCTATACAAAGAAAACCTCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCGCTTGGTGCAGAGCTAAGAACTCTTAGCAAGGAGATTAAAGTAGTTGGAATCAAACAAATATCCATCCTCCAGAAACTTGGAAATACTCCTTGTGAAGATCAGCTCTACCGGTGGGCATCATCCGAGGACTGTTCCATTATATCACACACTAAATTGCTTTTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTGCCTCAGCTTTAAAGAAGATTTCATTTTGCTTTAGATGTCTAGAAGAAAAGCTAGTGTATCAAATTTTGGGAAGAGATACTGTTAGCACTTCATTGAATACAGATTTTCACATTGATGTTGTGAATTTCAGAACAGAAAGTGGCATGTTAGTACCCTTTGTTTCTCAAGTAGCTACACCTGTAACTAAGAAGATTGATCATGTACAGGAATCCCATGAAGATAAAGTATCACTATCTTATAGTGTTGAGGGCTTGCGGCGTTCTAAGCGTCGGAATGTACAACCAGAGCGTTACCTTGGTTGTGATAATGATGCTTCTGAGATTGATGTTGGTTCTTTCAGAAACAGACCACCGGTGAAGATAGACACATGGAAAGATGAGGATGACCAAGAACTACATATACCATTAGCGTGCCTGTTTGGTTTGCAGAAGAACTTTCTAGAAGAAGTTACTGATAATCATCAAAAGAAGGCAAGTACCTGCCGGGAGCTTGTGATGTATAAGAGGAGAATGGCCAAGAACCAGGAGGTAAAGTCAGGAGAAAATTATGATAATGAAGATCAAAATCGACTTGCTATTATTCCTATTCCTGATCAAGATGATCCGATACTTGTTGAGCATTGTGATGTTGAGCATTGTGATGATTTAGATGACAAGGTTACTAGAAGTTATGGTCATGAATCCCCTGAACATTATTCCAAATATTATCATCTAACTAGTACCCCCAATAAATCAACCAGGAAAGATGATAAATTTTTACCTTTTGAGCCAAATAACCATCCTTCAACGTCAGATGATATAGAAAAGAATGATGATTTGTCATTGAGATATCATTATAGTTATGGTGTCCCTAAGTCACAGAGGAAGAGTTTATGTGGTTTGGATGATATAGTGGATCTTGGAAATAAATGGGAAGGGATGAGACCCAATAAAGGAGTTCGAAGGAAAAAATCTCATGGAGCATATTCAAGAAGTAGAGATCATGGAGAAGGGAAAAGATACAACTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCGTACTTAAAGAATATTAATACAAAACCTGCTCAAGAAGAACCATCTATCACTGACCAGTGGAAGGAAAACAACACAACTAGTACCATTGGGCAAAAGACGGGAACAGGAACTCTTGATGAAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTTTCATTGGCGTCATGCTATCTTGAAGAGGATTCAAATGCTGCTTTTATCACTGACACTGTGGAAAAGCCGAATAAAGGCTGTCCACATGATTTCAGAATGAATGAAGAAATTGGAATTTACTGCTATAGATGTGGCTTAGTGAGCACTGAGATCAAATATATTACGCCACCCTTTATTCAACATTCCGCGTGGCACCAAGAGGAGAAGCACAGTGCTGAAGATTCACGAACCAGGGTTGATGAGGATGATGACTTGGATCTTTTCCCCGCCCTAGATTCTCCTGAGGGACCTGTGTCTCAAGAAAATGATAACGTCTGGGCATTGATTCCCGAACTTAGAATAAAGTTGCATGCTCATCAGAAGAAAGCCTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGAACCCAGACTTATGGAAGCAACATCCAAAAGAATAGGTGGCTGTGTGGTATCTCATACTCCTGGTGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTGAGCTACTTGAAGTTATTCCCAGGGAAGAGACCTCTTGTCCTTGCTCCAAAAACAACCCTCTATACTTGGTACAAAGAATTTATTAAGTGGGATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACATACCGTGTATTCAAGCAGAAATCACCGGTTGTTCTTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAGCATGTTTTGGATTGTCTTGAGAAGATACAAAAATGGCATTCACAACCGAGTGTTCTAATAATGGGTTACACTTCATTTTTAACATTGATGCGTGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTACTGAGGGAAAGCCCTGGGATCATGGTACTGGATGAAGGGCACAATCCCAGAAGCACTAAATCAAGGTTGAGAAAGGTTTTGATGAAAGTACAAACAAAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTTAATACTTTGTGCTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCATTAGACCCCAAATACAGGAGAAAAGGGAAAGTGGCAAAAAAGGCAAGTCATTTATTAGAGTCACGGGCTAGAAAATTCTTCTTAGACAAAATTGCTAAGAAGATCGACTCTGGTAAAGGTAGGGAGAGGCAGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTACAAATTTATACATTGTTAATGAATTCAACCGATACACAACATGAGATTTTGCATAAACTGCACAAGAAAATGGCCCAGTGCAATGGTTACCCTCTGGAATTAGAGCTTTTGATAACTCTTGGTTCAATACATCCCTGGCTGGTCAAAACGGCAGTATGTGCTCAGAAGTTTTTCTCTTCTGAGCAATTGATGGAGCTAGAAAAATGCAAATTTGATCTAAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTGAGAAAGGAGAAGGTTCTTATATTTTGCCACAACATTGCACCTGTGAAGCTATTTGTGGAGTATTTTGAGAAGTACTTTGGATGGCTAAGAGGTAAGGAAGTTTTGGTTCTAACTGGGGAATTAGAGCTCTTTGAAAGGGGTAGAGTAATGGATAAGTTTGAGGAACCTGGTGGAGTAGCAAAGATACTCCTTGCTTCCATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCAGCTTCTCGAGTTATCATGTTGGACTCAGAGTGGAACCCTTCAAAAACAAAGCAGGCCATTGCTCGGGCTTTTCGGCCTGGTCAGCAGAAAGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTCAGTGAAGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATAGAAGATGATATACTCAGAGAAATGGTTGCTGAAGACAGGTCTAAATCATTCCACATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 3930 0.398 MVQRKRRLDQTKHPFNSHPFEAVAFGSWQAVEFIKIEAGVLSMHFVDNHYMTMEKGPLSDIRISSRKATLSDCSRFLRPGIDICVLSAPQQSNDSDAIVIDPVWTDAKISSIQRKPHDSECSCQFYVNFYVHQGSLGAELRTLSKEIKVVGIKQISILQKLGNTPCEDQLYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASALKKISFCFRCLEEKLVYQILGRDTVSTSLNTDFHIDVVNFRTESGMLVPFVSQVATPVTKKIDHVQESHEDKVSLSYSVEGLRRSKRRNVQPERYLGCDNDASEIDVGSFRNRPPVKIDTWKDEDDQELHIPLACLFGLQKNFLEEVTDNHQKKASTCRELVMYKRRMAKNQEVKSGENYDNEDQNRLAIIPIPDQDDPILVEHCDVEHCDDLDDKVTRSYGHESPEHYSKYYHLTSTPNKSTRKDDKFLPFEPNNHPSTSDDIEKNDDLSLRYHYSYGVPKSQRKSLCGLDDIVDLGNKWEGMRPNKGVRRKKSHGAYSRSRDHGEGKRYNYKDRTLNAAAYKDLINSYLKNINTKPAQEEPSITDQWKENNTTSTIGQKTGTGTLDEEDAEEVSEMDMLWRELEVSLASCYLEEDSNAAFITDTVEKPNKGCPHDFRMNEEIGIYCYRCGLVSTEIKYITPPFIQHSAWHQEEKHSAEDSRTRVDEDDDLDLFPALDSPEGPVSQENDNVWALIPELRIKLHAHQKKAFEFLWQNIAGSMEPRLMEATSKRIGGCVVSHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSPVVLPGVPKPTDDVKHVLDCLEKIQKWHSQPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTKLRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDPKYRRKGKVAKKASHLLESRARKFFLDKIAKKIDSGKGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHKLHKKMAQCNGYPLELELLITLGSIHPWLVKTAVCAQKFFSSEQLMELEKCKFDLKIGSKVRFVLSLIYRVVRKEKVLIFCHNIAPVKLFVEYFEKYFGWLRGKEVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASSTNK* 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02923 1309 CDD DEXHc_ATRX-like 727 957 - -
Phac8g02923 1309 SMART helicmild6 1142 1227 IPR001650 -
Phac8g02923 1309 Pfam Helicase conserved C-terminal domain 1110 1226 IPR001650 -
Phac8g02923 1309 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1114 1274 IPR001650 -
Phac8g02923 1309 SMART ultradead3 723 957 IPR014001 -
Phac8g02923 1309 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1305 IPR044567 GO:0080188
Phac8g02923 1309 MobiDBLite consensus disorder prediction 438 470 - -
Phac8g02923 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1289 IPR027417 -
Phac8g02923 1309 MobiDBLite consensus disorder prediction 509 534 - -
Phac8g02923 1309 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 752 952 IPR014001 -
Phac8g02923 1309 Gene3D - 1032 1309 IPR027417 -
Phac8g02923 1309 CDD SF2_C_SNF 1102 1238 - -
Phac8g02923 1309 Gene3D - 707 993 IPR038718 -
Phac8g02923 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 965 IPR027417 -
Phac8g02923 1309 Pfam SNF2-related domain 740 995 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02923 Phac-Chr8 38064287 38070730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02923 1152 1245 RAD5 or RAD16-like Gene Family AT5G43530 40.426 3.41e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac8g02923 SNF2_N 1.2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02923 K10875 - gmx:100811703 2199.48