Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02855 ATGCCAGAAAACAGACAGGTTCTCAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGCGATTCGTCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGATTGCTTGTATTATTTGAGAACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATACCACCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCACCATCCACAGCATGCTTCCCTTGGAGCATATCCCTTGGCTGGTTCTCCTACCTCAACAATTATCCCTACATCAGGTTTGCCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCTAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAAGCATTATACCCATGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACGATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGTGGGCAGGCCATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTATTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTATCTGCACTTGATGCTCCTCTCATTAGTAACCAAAGAGGGTTGTCAAGTGTACAATCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGGCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCGGAGCCTTTACATGACTAA 1278 0.4351 MPENRQVLRNADSTPSGDNIEGGADFSAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQSIIPMQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSALDAPLISNQRGLSSVQSPETSPSKLSSDNKLQHSDAKAGTEDSSKQADTTPNSFPASSEPLHD* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02855 425 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Phac8g02855 425 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Phac8g02855 425 PANTHER PROTEIN PHOSPHATASE RELATED 39 380 - -
Phac8g02855 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 121 IPR000571 GO:0046872
Phac8g02855 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Phac8g02855 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 78 IPR000571 GO:0046872
Phac8g02855 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Phac8g02855 425 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Phac8g02855 425 SUPERFAMILY CCCH zinc finger 280 305 IPR036855 GO:0046872
Phac8g02855 425 Gene3D - 127 173 - -
Phac8g02855 425 MobiDBLite consensus disorder prediction 372 391 - -
Phac8g02855 425 SUPERFAMILY CCCH zinc finger 138 167 IPR036855 GO:0046872
Phac8g02855 425 MobiDBLite consensus disorder prediction 372 425 - -
Phac8g02855 425 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Phac8g02855 425 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Phac8g02855 425 MobiDBLite consensus disorder prediction 1 24 - -
Phac8g02855 425 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Phac8g02855 425 SUPERFAMILY CCCH zinc finger 317 345 IPR036855 GO:0046872
Phac8g02855 425 Gene3D - 274 352 - -
Phac8g02855 425 Gene3D - 51 126 - -
Phac8g02855 425 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Phac8g02855 425 MobiDBLite consensus disorder prediction 405 419 - -
Phac8g02855 425 SUPERFAMILY CCCH zinc finger 57 79 IPR036855 GO:0046872
Phac8g02855 425 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Phac8g02855 425 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Phac8g02855 425 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Phac8g02855 425 SMART c3hfinal6 141 166 IPR000571 GO:0046872
Phac8g02855 425 SMART c3hfinal6 52 79 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02855 Phac-Chr8 37473343 37478687 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02855 1 407 C3H Transcription Factor Family AT1G04990 47.470 2.78e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac8g02855 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02855 - - vra:106765262 882.863