Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac8g02854 | ATGCCAGAAAACAGACAGGTTCTCAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGATTGCTTGTATTATTTGAGAACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATACCACCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCACCATCCACAGCATGCTTCCCTTGGAGCATATCCCTTGGCTGGTTCTCCTACCTCAACAATTATCCCTACATCAGGTTTGCCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCTAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAAGCATTATACCCATGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACGATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGTGGGCAGGCCATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTATTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTATCTGCACTTGATGCTCCTCTCATTAGTAACCAAAGAGGGTTGTCAAGTGTACAATCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGGCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCGGAGCCTTTACATGACTAA | 1263 | 0.4347 | MPENRQVLRNADSTPSGDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQSIIPMQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSALDAPLISNQRGLSSVQSPETSPSKLSSDNKLQHSDAKAGTEDSSKQADTTPNSFPASSEPLHD* | 421 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac8g02854 | 420 | MobiDBLite | consensus disorder prediction | 367 | 386 | - | - | |
| Phac8g02854 | 420 | MobiDBLite | consensus disorder prediction | 367 | 420 | - | - | |
| Phac8g02854 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | SUPERFAMILY | CCCH zinc finger | 52 | 74 | IPR036855 | GO:0046872 | |
| Phac8g02854 | 420 | SUPERFAMILY | CCCH zinc finger | 133 | 162 | IPR036855 | GO:0046872 | |
| Phac8g02854 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | MobiDBLite | consensus disorder prediction | 400 | 414 | - | - | |
| Phac8g02854 | 420 | SUPERFAMILY | CCCH zinc finger | 275 | 300 | IPR036855 | GO:0046872 | |
| Phac8g02854 | 420 | Gene3D | - | 46 | 120 | - | - | |
| Phac8g02854 | 420 | Gene3D | - | 269 | 348 | - | - | |
| Phac8g02854 | 420 | SMART | c3hfinal6 | 89 | 116 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | SMART | c3hfinal6 | 136 | 161 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | SMART | c3hfinal6 | 271 | 298 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | SMART | c3hfinal6 | 314 | 341 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 89 | 117 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | PANTHER | PROTEIN PHOSPHATASE RELATED | 33 | 375 | - | - | |
| Phac8g02854 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 138 | 161 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 116 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 273 | 298 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 316 | 340 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 314 | 342 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | ProSiteProfiles | Zinc finger C3H1-type profile. | 271 | 299 | IPR000571 | GO:0046872 | |
| Phac8g02854 | 420 | Gene3D | - | 121 | 168 | - | - | |
| Phac8g02854 | 420 | SUPERFAMILY | CCCH zinc finger | 312 | 340 | IPR036855 | GO:0046872 | |
| Phac8g02854 | 420 | SUPERFAMILY | CCCH zinc finger | 93 | 118 | IPR036855 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac8g02854 | Phac-Chr8 | 37473343 | 37478687 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac8g02854 | 1 | 402 | C3H Transcription Factor Family | AT1G04990 | 48.049 | 4.45e-118 | 348 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Phac8g02854 | zf-CCCH | 4.2e-07 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac8g02854 | - | - | vra:106765262 | 870.537 |