Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02852 ATGCCAGAAAACAGACAGGTTCTCAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCTGATTGCTTGTATTATTTGAGAACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCAATTGGTACTCATTATGGTGAAGAACTCCCTCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATACCACCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCACCATCCACAGCATGCTTCCCTTGGAGCATATCCCTTGGCTGGTTCTCCTACCTCAACAATTATCCCTACATCAGGTTTGCCATATGCTGGAGGGTTTCCTGCATGGTCAGCAGTACCTAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCTCCTTTTCTGTCTTCTTCACAAAGCATTATACCCATGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCAACGATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGTGGGCAGGCCATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCTGATTGCAAGTTCCACCATCCAAAAGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTATTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTATCTGCACTTGATGCTCCTCTCATTAGTAACCAAAGAGGGTTGTCAAGTGTACAATCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGGCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCGGAGCCTTTACATGACTAA 1260 0.4349 MPENRQVLRNADSTPSGDNIEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASLGAYPLAGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQSIIPMQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALSALDAPLISNQRGLSSVQSPETSPSKLSSDNKLQHSDAKAGTEDSSKQADTTPNSFPASSEPLHD* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02852 419 ProSiteProfiles Zinc finger C3H1-type profile. 270 298 IPR000571 GO:0046872
Phac8g02852 419 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Phac8g02852 419 MobiDBLite consensus disorder prediction 399 413 - -
Phac8g02852 419 SUPERFAMILY CCCH zinc finger 311 339 IPR036855 GO:0046872
Phac8g02852 419 Gene3D - 122 167 - -
Phac8g02852 419 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Phac8g02852 419 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
Phac8g02852 419 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Phac8g02852 419 SMART c3hfinal6 270 297 IPR000571 GO:0046872
Phac8g02852 419 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Phac8g02852 419 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Phac8g02852 419 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Phac8g02852 419 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Phac8g02852 419 SUPERFAMILY CCCH zinc finger 274 299 IPR036855 GO:0046872
Phac8g02852 419 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Phac8g02852 419 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Phac8g02852 419 Gene3D - 268 347 - -
Phac8g02852 419 Gene3D - 45 121 - -
Phac8g02852 419 MobiDBLite consensus disorder prediction 366 385 - -
Phac8g02852 419 SUPERFAMILY CCCH zinc finger 92 117 IPR036855 GO:0046872
Phac8g02852 419 PANTHER PROTEIN PHOSPHATASE RELATED 32 374 - -
Phac8g02852 419 MobiDBLite consensus disorder prediction 366 419 - -
Phac8g02852 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Phac8g02852 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Phac8g02852 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Phac8g02852 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 297 IPR000571 GO:0046872
Phac8g02852 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 115 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02852 Phac-Chr8 37473343 37478687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02852 1 401 C3H Transcription Factor Family AT1G04990 48.049 4.79e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac8g02852 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02852 - - vra:106765262 868.226