Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02746 ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCTGAACCGGCCAAACCCATGGAGCCACAGCAACAAGACCAAGAGTCAGGGGAACAACTCGACCAGCAACAACAACCCAACCCCGAACCAACCCTAGAAGACCCCAACACCATGGCCGTCGACGAACCAACAGAGGAACAACAGCAGGAACAGCAAATCGCCGAAGGCGAAGAAGTGGAAGAGGAATCAGAGGAGCAACAGGAGCCAGAGACAGAAACCCTAGAAGAGCAACCGGAGCCGGAAGCCCTAGAAGCGGCGAACCTCGCCGAAGCCAACGGTGCTGATGAAGAAGGGAACACCGACGAGGAGGATGAGGATCTCAGTCTCGAAGATGAGCCCGTGGAGAAACTTCTCGAACCCTTCACGAAGGAGCAGCTGCACGCTCTTGTGAAGCAGGCCGTTGAGAGGTTCCCTGAATTCATCGAGAGCGTCCGCCAGCTCGCCGATGTGGACCCCGCCCACCGGAAAATCTTCGTCCACGGCCTCGGCTGGGATGCCACCGCTGAAACCCTAACCTCCGTGTTCGGGAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAAGTCTCCGGCAAATCGAAGGGTTACGCTTTCATCCTTTTCAAGCACAAGGATGATGCTCGAAAGGCGCTGAAAAATCCCCAGAAGAAGATTGGAAACCGCACCACTTCTTGTCAGCTGGCCTCTGCTGGCCCTGTTCCGGCGCCCCCGCCGAATGCCAACCCGGTTTCTGAATACACGCAGAGGAAGATATTTGTGAGCAACGTGAGTGCTGAGATTGATCCCCAGAAACTTCTTGAATTCTTCAAGCAATTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTCGACAAGAACACTGGGAAACCTAAGGGTTTTGCCTTGTTTGTTTATAAGTCTGTGGAGAGTTCCAAGAAGGCTTTGGAAGAACCTCATAAGAATTTTGAGGGCCATACTCTGTATTGTCAGAAGGCTGTCGATGGTCCCAAGGGGAACAAGGGGTATCATCAGTATCACCATCAGCAGCATTCTCATCATCACCACCATCACCATCATCAGCCTCATTATCAGAGAAAGGAGAAGAACAAGTATTCCTCTGGTGGTGGTGGGCCGTCCCATGGCAGTGGTCATCTGATGGCTCCCTCGGCGTCTGCTGTGGGGGGTTTCAACCCCGGTGTGCCGGCTCAAGGGTTGAATCCTGCTCTTGGACAGGCGCTGACCGCTTTGCTTACTAACCAGGGAGCTGGTTTGGGTCTTGGAAATCTGCTTGGAGGGCTTGGTGGTGCCCCCGTTAACCAGACTGGGCCACCTGCCCCGTATGGGAATCAGCCTGCAATGGGATATGGGAACCAGCCAGCAATGCAGCAGGGATACCAGAATCCCCAAATGGGTCAGATCAGTGGTGTCAGACCCCACCCTGGTGCTGGCGCTCCTTATATGGGTCATTAG 1485 0.5455 MAKKRKLRSSDPEPAKPMEPQQQDQESGEQLDQQQQPNPEPTLEDPNTMAVDEPTEEQQQEQQIAEGEEVEEESEEQQEPETETLEEQPEPEALEAANLAEANGADEEGNTDEEDEDLSLEDEPVEKLLEPFTKEQLHALVKQAVERFPEFIESVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHKDDARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESSKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQTGPPAPYGNQPAMGYGNQPAMQQGYQNPQMGQISGVRPHPGAGAPYMGH* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02746 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Phac8g02746 494 SMART rrm1_1 263 335 IPR000504 GO:0003723
Phac8g02746 494 SMART rrm1_1 167 239 IPR000504 GO:0003723
Phac8g02746 494 Gene3D - 157 244 IPR012677 -
Phac8g02746 494 MobiDBLite consensus disorder prediction 348 370 - -
Phac8g02746 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 340 IPR000504 GO:0003723
Phac8g02746 494 Coils Coil 57 77 - -
Phac8g02746 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 44 339 - -
Phac8g02746 494 MobiDBLite consensus disorder prediction 20 43 - -
Phac8g02746 494 SUPERFAMILY RNA-binding domain, RBD 155 244 IPR035979 GO:0003676
Phac8g02746 494 MobiDBLite consensus disorder prediction 106 120 - -
Phac8g02746 494 MobiDBLite consensus disorder prediction 1 120 - -
Phac8g02746 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 332 IPR000504 GO:0003723
Phac8g02746 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Phac8g02746 494 SUPERFAMILY RNA-binding domain, RBD 246 360 IPR035979 GO:0003676
Phac8g02746 494 MobiDBLite consensus disorder prediction 62 90 - -
Phac8g02746 494 Gene3D - 249 388 IPR012677 -
Phac8g02746 494 MobiDBLite consensus disorder prediction 342 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02746 Phac-Chr8 36594952 36599505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02746 258 341 C2H2 Transcription Factor Family AT2G19380 28.571 7.95e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02746 K12741 - gmx:100783742 694.115