Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02727 ATGTCAAGTGGAGCAACGCACTGGTGTCATGCATGCAGACAACCAATTGTGCTTGATGGGGGAGACACTCTATGTCCTTACTGTGATGGAGGGTTTGTAGAAGAACTTGATGAGTTGCGAGGAGCTGCACCCCATCATACATATTCATCACAGTCGGGAGAGTTTAATCAAATGCCTGACCTTGTTGATGCTATACGTGCTTTTATGGGGCAGAGAGGTTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAATTTTGATGTTAGAGGGAGGTCAGGGTCTTTCCCAGCTCCTGAACAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTACTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCAACTGGCAGCCCTAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATTGAGCAACTCACTATGAATGATCGCCGAGGCCCACCGCCAGCCGCACGATCTTTGATCGATGCTATGCCTACTATTAGGATAACACAGGCACATGTTCGCTTAGATTCACACTGTCCAGTTTGTAAAGATAAATTTGAACTGGGCACTGAAGCGAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAGGTTAATTCCCGCAGTACAAGTTTGGGAGGAAGGAATGCCGGCACCAGCAGCAGTGGCGGAAATGATAGTAGCTCCAGGGGCAGGGAGAACAACAGCCCTCAGAACCATGGAAGGAGAAATCCATTATCATTTTTGTGGCCATTCCGCTCCTCCTCTAGCTCAAACAATAATCATTATTCTGAGACTGGGGGAAGCAGTTCTTCAACCACTCCTGACCAGAATAATGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAA 1008 0.4633 MSSGATHWCHACRQPIVLDGGDTLCPYCDGGFVEELDELRGAAPHHTYSSQSGEFNQMPDLVDAIRAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSFPAPEQSWGVFSSGPYLIFHGQVPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSLIDAMPTIRITQAHVRLDSHCPVCKDKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVNSRSTSLGGRNAGTSSSGGNDSSSRGRENNSPQNHGRRNPLSFLWPFRSSSSSNNNHYSETGGSSSSTTPDQNNGTSYSGWPFDH* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02727 335 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Phac8g02727 335 SMART ring_2 200 240 IPR001841 -
Phac8g02727 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Phac8g02727 335 SUPERFAMILY RING/U-box 180 247 - -
Phac8g02727 335 Pfam Ring finger domain 199 241 IPR001841 -
Phac8g02727 335 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Phac8g02727 335 MobiDBLite consensus disorder prediction 248 335 - -
Phac8g02727 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 245 - -
Phac8g02727 335 CDD RING-H2_RNF126-like 200 241 - -
Phac8g02727 335 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02727 Phac-Chr8 36416375 36419411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02727 144 245 C3H Transcription Factor Family AT5G01980 46.154 2.05e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02727 K11982 - gmx:100813674 571.622