Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02656 ATGGAGGGGTTCGGAACCGGCCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGGAGAAGGGGAAAACCCAAGTTTTGCCCCTTTCGTCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGTCATGTCTCCAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAGTCATTCTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGACAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTGATTTCCCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGAAGGTATTCCATCTGAGGCTAATAGTCCTCGAACCTACACTAGAAGAAGTTCTCCGTTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGAAAAAGGATAGCGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTGGATGTGGTTTTATATGCTGTCCCTCAAAAGGCTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCCGGAGGATCTGACAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCACCGAGTTGGGAGTGGTTTGGGTGTGAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTTCAGAATATTGCTTGCGGTGGACGACATGCAGCCCTAGTGACCAAACAAGGTGAAATTTTCTCCTGGGGGGAGGAATCAGGTGGCAGACTCGGGCACGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGATGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCACACATGTGCTGTGACACTTTCTGGTGATCTTTATACGTGGGGTAATGGTACATACAATTATGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGCCCCTTGGAAGGCATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTGCCAAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTGTGCGGGCTGCGTGTGGGGTTTGGCATACAGCTGCAGTCGTAGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTAGTAAGGAAGAAAAACTTGTTCCTACCTGTGTTGCCCTCATTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGCCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAATTAGGCAATCCTCAGGCTGATGGGAGGCTACCAATTCGTGTTGAAGGGAAACTGTCAAAAAGTTTCGTGGAGGAGATAGCTTGTGGTGCGTATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTGGTAGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCCGGTGTTGACCAGTCTATGTGTACGGGCTGTCGTATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGCGGACTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTTAGGAAAACAGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCGTGGGTCGCTGGAGTTAATTGATAAGGATGATAAATTAGATTCCAGATCTCGTAATCAACTCGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGTAGCCGGGTCTCACCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTTTTCTCAGCTTCTGTCCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACACCAACCCCAACGCTAGGAGGTCTTACATCACCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAAGAAGTTGAGCTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGAGGCTACCTGTAGTACCTGCTAGGAATGCGAAATCACCTTCTATTGCTTCTTTTGGTTCCAATCCTTGTTCCAATGATGTTAACTATGCTTCCATTGACCGATTAAATATTCAAACATCAAGTCCAGAGGCAGATTTAACTGCATCAAACAACCAGTTACTCTCAAATGGATCAAGCACAGTTAGTAACCGAAGTGCAGGTCACAATAAACAGGGCCAGTCTGATTCAACAAATAGAAATGGGAGCAGAACAAAAGACTGTGAATCCCGTAGTGAAAGTGAATGGGTTGAGCAAGATGAACCTGGTGTTTATATTACGCTCACCTCCCTTCCAGGAGGTAAAATAGAGCTTAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAACAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCTCATGATTGACAAGTCTACTGTCGGTGTTGGGAGTGAAGACCTGGCTCATTGA 3297 0.4389 MEGFGTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSEGIPSEANSPRTYTRRSSPLNSPFGSNESLKKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKAFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSGLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEEKLVPTCVALIEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGRLPIRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCTGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNRGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVVPARNAKSPSIASFGSNPCSNDVNYASIDRLNIQTSSPEADLTASNNQLLSNGSSTVSNRSAGHNKQGQSDSTNRNGSRTKDCESRSESEWVEQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVLMIDKSTVGVGSEDLAH* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02656 1098 SUPERFAMILY PH domain-like 12 120 - -
Phac8g02656 1098 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 466 476 IPR000408 -
Phac8g02656 1098 Gene3D - 211 383 IPR009091 -
Phac8g02656 1098 Gene3D - 384 487 IPR009091 -
Phac8g02656 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 659 720 IPR013083 -
Phac8g02656 1098 Pfam FYVE zinc finger 647 713 IPR000306 GO:0046872
Phac8g02656 1098 CDD FYVE_like_SF 656 709 - -
Phac8g02656 1098 SUPERFAMILY RCC1/BLIP-II 258 648 IPR009091 -
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Phac8g02656 1098 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 307 317 IPR000408 -
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 1013 1027 - -
Phac8g02656 1098 Pfam Transcription factor regulating root and shoot growth via Pin3 1024 1079 IPR013591 -
Phac8g02656 1098 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 651 713 IPR017455 -
Phac8g02656 1098 Coils Coil 913 933 - -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 780 794 - -
Phac8g02656 1098 Pfam Transcription factor BRX N-terminal domain 908 936 IPR027988 -
Phac8g02656 1098 ProSiteProfiles BRX domain profile. 1025 1080 IPR013591 -
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 320 IPR000408 -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 980 1027 - -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 980 1012 - -
Phac8g02656 1098 Pfam Regulator of chromosome condensation (RCC1) repeat 542 591 IPR000408 -
Phac8g02656 1098 Pfam Regulator of chromosome condensation (RCC1) repeat 372 424 IPR000408 -
Phac8g02656 1098 Pfam Regulator of chromosome condensation (RCC1) repeat 596 643 IPR000408 -
Phac8g02656 1098 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Phac8g02656 1098 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Phac8g02656 1098 Pfam Regulator of chromosome condensation (RCC1) repeat 491 539 IPR000408 -
Phac8g02656 1098 Pfam Pleckstrin homology domain 14 120 IPR001849 -
Phac8g02656 1098 CDD PH_PLC_plant-like 11 121 - -
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 542 IPR000408 -
Phac8g02656 1098 FunFam PH, RCC1 and FYVE domains-containing protein 1 482 652 - -
Phac8g02656 1098 Gene3D - 488 658 IPR009091 -
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 595 646 IPR000408 -
Phac8g02656 1098 SMART fyve_4 645 714 IPR000306 GO:0046872
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 427 IPR000408 -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 825 853 - -
Phac8g02656 1098 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 56 926 - -
Phac8g02656 1098 Pfam Unstructured region between BRX_N and BRX domain 949 1018 - -
Phac8g02656 1098 SUPERFAMILY FYVE/PHD zinc finger 647 718 IPR011011 -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 129 183 - -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 135 163 - -
Phac8g02656 1098 FunFam PH, RCC1 and FYVE domains-containing protein 1 230 481 - -
Phac8g02656 1098 Coils Coil 857 898 - -
Phac8g02656 1098 FunFam Putative E3 ubiquitin-protein ligase HERC1 653 721 - -
Phac8g02656 1098 MobiDBLite consensus disorder prediction 771 794 - -
Phac8g02656 1098 Gene3D - 12 129 IPR011993 -
Phac8g02656 1098 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Phac8g02656 1098 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 590 611 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 304 317 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 414 430 IPR000408 -
Phac8g02656 1098 PRINTS Chromosome condensation regulator RCC1 signature 430 444 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02656 Phac-Chr8 35724111 35732442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02656 917 1089 Major Intrinsic Protein MIP AT1G31880 31.551 4.29e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02656 - - gmx:100802464 1995.32