Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02644 ATGGAAGAAATTGACGAGGATGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGCACAGCTGAAGATGCTGAAAGGAATAATCGTTCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCAGAAATTGATTGGACTGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTACAGAAGGACAATTTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCCCAACATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGAAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTCGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTTTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCACTCTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCTAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGAAAAAAGACCAGGGAAGCCAATAAAATTCAATGCACTTTTGACAACATATGAAGTAGTTTTGAAGGATAAGGCTTTTCTGTCCAAGATCAGATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCATTGCTTCATTTCCTTGACCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAATTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCATACAGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTGCCCCCTAAAATTGAGCGTATACTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGGGGGAATCAGGTTTCTCTTCTAAATATTGTGGTTGAATTAAAAAAGTGCTGCAACCATCCGTTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCAGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTTCTTGTTCGATTGCATGAAACCAAGCATCGTGTATTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATAAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGATCACTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGCAAGAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAAGAACCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAGCCAGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCTGAAAGAACTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAATTCAGAAACGGCGAAAAGCAGAGTATTCTGCTCCTGCTGTACCAATGATTGAAGGAGCATGTGTTCAAGTGAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGACGCACTTCGTTTTTCGCGTTCAGTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCAGCTCCAACTGGAGCACAGATTGAACTTTTCAATGCTCTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAGTGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGATCGATATGAAGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATATTTCCATGGGTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGATCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTCGGTGTGAAAAATGCCAATAGCAAAGTTGGACGGAAGCCTTCAAAGAAAGAGAGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCGGGTTCTGTTAATGTCCAAATAAGAAAGGATAGATTTCAAAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAGCAGTTCAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCATGGCAATGGGTCGGTATCTGTTTCATTTACCAGAAATGGAAATCCATTCCGTGCCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAATACCTATCAAATGCCAGAAGCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAAAGGACCGGAAGTAATGGACTCCGGATTACTGATCCCAACTCACTCGGGATCCTTGGTGCTGGGCCATCGGATAAACGCTTTGCTAATGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAGACAGGGCTTCTCCTCAGGTATAAAGTAA 4041 0.4026 MEEIDEDDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWTEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKRPGKPIKFNALLTTYEVVLKDKAFLSKIRWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEPDGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSERTNKRKKKEPEPPERIQKRRKAEYSAPAVPMIEGACVQVRSWSYGNLSKRDALRFSRSVMKYGNESQIDLIAAEVGGAVGAAPTGAQIELFNALIDGCTEAVELGNLDVKGPLLDFFGVPVKASDLLTRVQQLQLLAKRIDRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQIRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSVSFTRNGNPFRAHMERQRGLKNMNTYQMPEAVDNSGKSEAWKRRRRAESDNQFQGQPPPQRTGSNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGGFPSRQGFSSGIK* 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02644 1346 MobiDBLite consensus disorder prediction 1286 1306 - -
Phac8g02644 1346 Coils Coil 676 696 - -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 802 836 - -
Phac8g02644 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 722 IPR027417 -
Phac8g02644 1346 SMART ultradead3 212 412 IPR014001 -
Phac8g02644 1346 FunFam protein CHROMATIN REMODELING 5 isoform X2 125 177 - -
Phac8g02644 1346 Gene3D - 2 123 - -
Phac8g02644 1346 SUPERFAMILY Chromo domain-like 102 178 IPR016197 -
Phac8g02644 1346 ProSiteProfiles Chromo and chromo shadow domain profile. 123 187 IPR000953 -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 1271 1285 - -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 1257 1346 - -
Phac8g02644 1346 SMART DUF4208_2 1111 1216 IPR025260 -
Phac8g02644 1346 CDD SF2_C_SNF 522 657 - -
Phac8g02644 1346 Gene3D - 943 1058 - -
Phac8g02644 1346 Pfam Chromo (CHRromatin Organisation MOdifier) domain 124 178 IPR023780 -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 1220 1245 - -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 1 33 - -
Phac8g02644 1346 SUPERFAMILY Chromo domain-like 6 90 IPR016197 -
Phac8g02644 1346 CDD CD1_tandem 8 88 - -
Phac8g02644 1346 CDD CD2_tandem 121 177 - -
Phac8g02644 1346 SMART chromo_7 121 180 IPR000953 -
Phac8g02644 1346 SMART chromo_7 9 91 IPR000953 -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 807 835 - -
Phac8g02644 1346 FunFam Photoperiod-independent early flowering 1 186 460 - -
Phac8g02644 1346 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 346 355 IPR002464 -
Phac8g02644 1346 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1276 - -
Phac8g02644 1346 Pfam Helicase conserved C-terminal domain 533 646 IPR001650 -
Phac8g02644 1346 Gene3D - 207 446 IPR038718 -
Phac8g02644 1346 Pfam SNF2-related domain 235 504 IPR000330 GO:0005524|GO:0140658
Phac8g02644 1346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 437 IPR027417 -
Phac8g02644 1346 ProSiteProfiles Chromo and chromo shadow domain profile. 10 98 IPR000953 -
Phac8g02644 1346 Pfam Domain of unknown function (DUF4208) 1123 1215 IPR025260 -
Phac8g02644 1346 Gene3D - 125 177 - -
Phac8g02644 1346 SMART helicmild6 562 646 IPR001650 -
Phac8g02644 1346 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 447 677 - -
Phac8g02644 1346 MobiDBLite consensus disorder prediction 11 32 - -
Phac8g02644 1346 Gene3D - 447 677 IPR027417 -
Phac8g02644 1346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 400 IPR014001 -
Phac8g02644 1346 Coils Coil 730 750 - -
Phac8g02644 1346 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 687 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02644 Phac-Chr8 35678298 35696642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02644 238 673 RAD5 or RAD16-like Gene Family AT1G02670 25.198 1.20e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac8g02644 SNF2_N 1.6e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02644 K11367 - gmx:100808039 2547.31