Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02643 ATGCTAACCGCAATCCTCAGAAGAACTTGTTCCACCCTCTCAAGGCGCGCTTTCCCCGCCGTCATAATCTCCGCCAGTAACGACTTCCGGCCAATCTCCGCCGCCTTCATTTCCAGAACCTTCCACTCCAAACCCGGTCCGTTGAATTTCCGTTCTTCTTTATATCATCGTGCGGAATATGCTGTTGACGATTTCCCTTACGAAGAAGGGTCTAAAGGGAACGCCGACGAAGGCCTCGAAATCGCGAAGCTCGGAATCTCTCAGGATATTGTCTCAGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCCAGGACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGGCGGGGTAGGGATCCTTTGGCTTTAGTTCTGGCTCCAACGAGAGAGCTTGCTAAGCAGGTTGAGAAGGAGTTCTATGAGTCGGCACCTAACTTGGATACAATTTGTGTTTATGGGGGTACGCCAATCTCTAAGCAAATGAGGCAGCTCGATTACGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATCTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAGGAGGAAGTGGAGAAGATCTTGGAAAGATTGCCCCTCAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAACAGATTTCACGCAATTACCTGAATGATCCCCTGACCATTGATCTAGTTGGAGATTCTGATCAGAAGTTAGCAGATGGAATTTCACTGTACTCCATTGCATCTGACTCGTATGTTAAAGCGGGAATTCTTGCACAGCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGACCGATTATCGTTTACCATGGGAAAAAGTGTTCAATGTGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAAAAGACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTGGTGGCAACTGATGTTGCGTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGAACTTCCCAATTCTTCAGAGATATTTGTTCATAGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTGAGGCTTATTGAGCGTGATGTGGGCTGTAAATTTACAGAGCTACCAAGGATTGCTGTTGATAGTGCATCTATGGACGCGATTGGCATGGGCGGTGGGCGGTTTGGCTCTTCTGGAGGTATAAGGGATCGTCGATATGGTGATACAGGTTTTGGCCGTGGTCCTGGATCTGGCCGTTCTGGTGGCTACAATAGTGGATTTGGCCGCCCTAGCTTTGGAGATTCTGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTTTGGTGGCTCTGGTTCCAGTCAATCAGGAGGGGGCTTTTCTGGTAGTTCATCTGGTGAAATGAGTAGATATAGTGGATCAAACTCTGGTAGGTTTGGCTCATCTGGTGGCTTTGGCTCTGGTCAATCAGGAAGTAGATCTGGTCGATCATCCAGTGGGTCTAGGTTTAGTCGTCCAGATGATTTTGGGGGATTTGGTGGTTCAAATCGTTCCGGTGGTTTTGGAGAATTTGGCTCAGGCCAATCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCATTTTAA 1860 0.4602 MLTAILRRTCSTLSRRAFPAVIISASNDFRPISAAFISRTFHSKPGPLNFRSSLYHRAEYAVDDFPYEEGSKGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQVGFQEEVEKILERLPLKRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSDQKLADGISLYSIASDSYVKAGILAQLITEHAKGGKCIVFTQTKRDADRLSFTMGKSVQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGCKFTELPRIAVDSASMDAIGMGGGRFGSSGGIRDRRYGDTGFGRGPGSGRSGGYNSGFGRPSFGDSGERFGGQNYNRFGGSGSSQSGGGFSGSSSGEMSRYSGSNSGRFGSSGGFGSGQSGSRSGRSSSGSRFSRPDDFGGFGGSNRSGGFGEFGSGQSSGFGDSRGSNQNNRRPF* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02643 619 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 457 IPR001650 -
Phac8g02643 619 Pfam DEAD/DEAH box helicase 103 272 IPR011545 GO:0003676|GO:0005524
Phac8g02643 619 FunFam ATP-dependent RNA helicase RhlE 71 287 - -
Phac8g02643 619 MobiDBLite consensus disorder prediction 594 619 - -
Phac8g02643 619 CDD SF2_C_DEAD 310 427 - -
Phac8g02643 619 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Phac8g02643 619 MobiDBLite consensus disorder prediction 519 577 - -
Phac8g02643 619 Gene3D - 305 461 IPR027417 -
Phac8g02643 619 Pfam Helicase conserved C-terminal domain 312 418 IPR001650 -
Phac8g02643 619 Gene3D - 80 288 IPR027417 -
Phac8g02643 619 SMART helicmild6 338 418 IPR001650 -
Phac8g02643 619 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 67 456 - -
Phac8g02643 619 SMART ultradead3 98 301 IPR014001 -
Phac8g02643 619 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 284 IPR014001 -
Phac8g02643 619 MobiDBLite consensus disorder prediction 467 619 - -
Phac8g02643 619 CDD DEADc 90 285 - -
Phac8g02643 619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02643 Phac-Chr8 35626108 35631235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02643 84 450 Eukaryotic Initiation Factors Gene Family AT3G19760 32.884 2.64e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02643 - - gmx:100786041 918.302