Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02601 ATGCACAGCCAACCAAATAGGAGGCTACTTGGGAATTCATCTAACATGAGACAGGTGCAGAAAACTGCTCAATCGACATTAAAGGCCAGTGGGCCGTATGGGAATTCAAACAACTTGGATCAAGAAGAGGCAGCCTCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAATTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACATGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTAGTTCCCCCCATCATCCTCCTTCACCTTCACAACCACTACCATCTAACATGAAATCCTCCTGTGTTCAGGGACTCCAAGAGAATCCTATGCCTGCTTCAGGATTTCATGTTGCTGATTCATCTCCGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACATGTTTCTTCAACATCTCAAAAAACTAGAGCTAAACTCTCACAAAGTGAGGCTAGAGAGCCCTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACAGGGTTTCAAGCAGTGGCGTTTGGACCACCACTAATAATATCACTTTATCTTCCGAGCCTGAAGCTGTAGATTGTATCCAGGGACCAATTCCTAGGAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTCTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGACCATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCATTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGGATAAGGCCTTCCAGAAAGAACCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGAGCATTGCAGCAACTTATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGGGAATGGGAATAGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCACATGCTCAACCCATGTCTCTCACTCACCCTCAGATGCCAAACCAGAATCTAATGTGCCAAAATCCAGTTTTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAACAATACGCACGTTACATGGGTTACCATCTCCTGCATAGTGCCTCTCAGTCAATGAATAATGTATTGAGATATGGTTCCCAAGCAATGCAACATAGTGAAACAATGATTGCAGGAGGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTTGATGATGCTGTTAGTGGCAAAACTGGTTCTTCCACCTTTATCTGA 1530 0.4373 MHSQPNRRLLGNSSNMRQVQKTAQSTLKASGPYGNSNNLDQEEAASWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYMPIRQLEEEKFANIFSPSSPHHPPSPSQPLPSNMKSSCVQGLQENPMPASGFHVADSSPKINDFGASRKVLNFPHFSAHVSSTSQKTRAKLSQSEAREPSVITVGSSHCGSNHIPQDQDVNRVSSSGVWTTTNNITLSSEPEAVDCIQGPIPRSERGKSEMIEPTLTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEALEEQSEATELKSADGNKLSQRIRPSRKNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMSQMGMGIGGPSLPSIHNPMQLPHAQPMSLTHPQMPNQNLMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHLLHSASQSMNNVLRYGSQAMQHSETMIAGGNNSSGPMSGTANVDDAVSGKTGSSTFI* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02601 509 MobiDBLite consensus disorder prediction 239 263 - -
Phac8g02601 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 356 IPR011598 GO:0046983
Phac8g02601 509 MobiDBLite consensus disorder prediction 92 120 - -
Phac8g02601 509 SMART finulus 313 362 IPR011598 GO:0046983
Phac8g02601 509 MobiDBLite consensus disorder prediction 303 321 - -
Phac8g02601 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 369 IPR036638 GO:0046983
Phac8g02601 509 Gene3D - 303 363 IPR036638 GO:0046983
Phac8g02601 509 MobiDBLite consensus disorder prediction 481 509 - -
Phac8g02601 509 PANTHER TRANSCRIPTION FACTOR PIF3 22 442 IPR044273 GO:0003700|GO:0006355
Phac8g02601 509 MobiDBLite consensus disorder prediction 1 38 - -
Phac8g02601 509 FunFam Basic helix-loop-helix transcription factor 302 365 - -
Phac8g02601 509 CDD bHLH_AtPIF_like 307 370 IPR047265 -
Phac8g02601 509 MobiDBLite consensus disorder prediction 264 288 - -
Phac8g02601 509 MobiDBLite consensus disorder prediction 225 321 - -
Phac8g02601 509 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02601 Phac-Chr8 35240850 35246169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02601 178 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 44.863 1.03e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g02601 HLH 6.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02601 K16189 - gmx:100811777 746.117