Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02600 ATGAACAACACTACTTCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCAAGAACACGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAACCAAATAGGAGGCTACTTGGGAATTCATCTAACATGAGACAGGTGCAGAAAACTGCTCAATCGACATTAAAGGCCAGTGGGCCGTATGGGAATTCAAACAACTTGGATCAAGAAGAGGCAGCCTCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAATTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACATGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTAGTTCCCCCCATCATCCTCCTTCACCTTCACAACCACTACCATCTAACATGAAATCCTCCTGTGTTCAGGGACTCCAAGAGAATCCTATGCCTGCTTCAGGATTTCATGTTGCTGATTCATCTCCGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACATGTTTCTTCAACATCTCAAAAAACTAGAGCTAAACTCTCACAAAGTGAGGCTAGAGAGCCCTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACAGGGTTTCAAGCAGTGGCGTTTGGACCACCACTAATAATATCACTTTATCTTCCGAGCCTGAAGCTGTAGATTGTATCCAGGGACCAATTCCTAGGAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTCTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGACCATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCATTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGGATAAGGCCTTCCAGAAAGAACCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGAGCATTGCAGCAACTTATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGTCACAGATGGGAATGGGAATAGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCACATGCTCAACCCATGTCTCTCACTCACCCTCAGATGCCAAACCAGAATCTAATGTGCCAAAATCCAGTTTTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAACAATACGCACGTTACATGGGTTACCATCTCCTGCATAGTGCCTCTCAGTCAATGAATAATGTATTGAGATATGGTTCCCAAGCAATGCAACATAGTGAAACAATGATTGCAGGAGGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTTGATGATGCTGTTAGTGGCAAAACTGGTTCTTCCACCTTTATCTGA 1650 0.4388 MNNTTSGWDFESDTCLTNQRKPTGLDQEHVELLWQNGQVVMHSQPNRRLLGNSSNMRQVQKTAQSTLKASGPYGNSNNLDQEEAASWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYMPIRQLEEEKFANIFSPSSPHHPPSPSQPLPSNMKSSCVQGLQENPMPASGFHVADSSPKINDFGASRKVLNFPHFSAHVSSTSQKTRAKLSQSEAREPSVITVGSSHCGSNHIPQDQDVNRVSSSGVWTTTNNITLSSEPEAVDCIQGPIPRSERGKSEMIEPTLTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEALEEQSEATELKSADGNKLSQRIRPSRKNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMSQMGMGIGGPSLPSIHNPMQLPHAQPMSLTHPQMPNQNLMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHLLHSASQSMNNVLRYGSQAMQHSETMIAGGNNSSGPMSGTANVDDAVSGKTGSSTFI* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02600 549 MobiDBLite consensus disorder prediction 279 303 - -
Phac8g02600 549 MobiDBLite consensus disorder prediction 132 162 - -
Phac8g02600 549 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 409 IPR036638 GO:0046983
Phac8g02600 549 FunFam Basic helix-loop-helix transcription factor 342 405 - -
Phac8g02600 549 MobiDBLite consensus disorder prediction 1 22 - -
Phac8g02600 549 MobiDBLite consensus disorder prediction 304 328 - -
Phac8g02600 549 PANTHER TRANSCRIPTION FACTOR PIF3 20 482 IPR044273 GO:0003700|GO:0006355
Phac8g02600 549 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Phac8g02600 549 MobiDBLite consensus disorder prediction 48 78 - -
Phac8g02600 549 SMART finulus 353 402 IPR011598 GO:0046983
Phac8g02600 549 MobiDBLite consensus disorder prediction 343 361 - -
Phac8g02600 549 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Phac8g02600 549 MobiDBLite consensus disorder prediction 521 549 - -
Phac8g02600 549 MobiDBLite consensus disorder prediction 265 361 - -
Phac8g02600 549 CDD bHLH_AtPIF_like 347 410 IPR047265 -
Phac8g02600 549 Gene3D - 343 403 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02600 Phac-Chr8 35240850 35246169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02600 7 516 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.438 1.76e-44 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g02600 HLH 7.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02600 K16189 - gmx:100811777 811.601