Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02598 ATGAACAACACTACTTCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCAAGAACACGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAACCAAATAGGAGGCTACTTGGGAATTCATCTAACATGAGACAGGTGCAGAAAACTGCTCAATCGACATTAAAGGCCAGTGGGCCGTATGGGAATTCAAACAACTTGGATCAAGAAGAGGCAGCCTCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAATTTTGTTCAAACCTTTTATCTGAGCTACCACCACCTTGTGAAGTTGAATCTTATTACATGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTAGTTCCCCCCATCATCCTCCTTCACCTTCACAACCACTACCATCTAACATGAAATCCTCCTGTGTTCAGGGACTCCAAGAGAATCCTATGCCTGCTTCAGGATTTCATGTTGCTGATTCATCTCCGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACATGTTTCTTCAACATCTCAAAAAACTAGAGCTAAACTCTCACAAAGTGAGGCTAGAGAGCCCTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACAGGGTTTCAAGCAGTGGCGTTTGGACCACCACTAATAATATCACTTTATCTTCCGAGCCTGAAGCTGTAGATTGTATCCAGGGACCAATTCCTAGGAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTCTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGACCATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCATTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGGATAAGGCCTTCCAGAAAGAACCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGAGCATTGCAGCAACTTATACCTAACAGTAACAAGGTTCCTTATCATAATGCTTGTTGA 1161 0.4393 MNNTTSGWDFESDTCLTNQRKPTGLDQEHVELLWQNGQVVMHSQPNRRLLGNSSNMRQVQKTAQSTLKASGPYGNSNNLDQEEAASWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYMPIRQLEEEKFANIFSPSSPHHPPSPSQPLPSNMKSSCVQGLQENPMPASGFHVADSSPKINDFGASRKVLNFPHFSAHVSSTSQKTRAKLSQSEAREPSVITVGSSHCGSNHIPQDQDVNRVSSSGVWTTTNNITLSSEPEAVDCIQGPIPRSERGKSEMIEPTLTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEEALEEQSEATELKSADGNKLSQRIRPSRKNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKVPYHNAC* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02598 386 MobiDBLite consensus disorder prediction 279 303 - -
Phac8g02598 386 MobiDBLite consensus disorder prediction 132 162 - -
Phac8g02598 386 Gene3D - 343 383 IPR036638 GO:0046983
Phac8g02598 386 MobiDBLite consensus disorder prediction 343 362 - -
Phac8g02598 386 MobiDBLite consensus disorder prediction 265 362 - -
Phac8g02598 386 PANTHER TRANSCRIPTION FACTOR PIF3 19 380 IPR044273 GO:0003700|GO:0006355
Phac8g02598 386 MobiDBLite consensus disorder prediction 1 22 - -
Phac8g02598 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 379 IPR036638 GO:0046983
Phac8g02598 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 386 IPR011598 GO:0046983
Phac8g02598 386 MobiDBLite consensus disorder prediction 304 328 - -
Phac8g02598 386 Pfam Helix-loop-helix DNA-binding domain 351 376 IPR011598 GO:0046983
Phac8g02598 386 MobiDBLite consensus disorder prediction 48 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02598 Phac-Chr8 35240850 35243467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02598 276 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 49.091 1.30e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g02598 HLH 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02598 K16189 - gmx:100811777 529.635