Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02504 ATGGGAGAGGGAGAGAACATAGAAGTGGAAACAGAAGCAGAATCTGAAACATCATCGTCATGGAACCTCGGAAAACACACTCAGATAATCGAGCTGTCGGAGAAGTTGTCGGACGGGAACCTCAGCGCCAAGATTGAGGCTGCCAGGGAGATAAGGAAGATGGTTCGGAAATCATCGTCCTCGTCGAAGATACGTGCGAAGCTCGCCTCCGCGGGTGTGATTGAACCGCTCGTGCTGATGCTGTCTTCTTCCAACATCGACGCTCGCCAATCCTCTCTTCTCGCTCTCCTCAACCTCGCTGTTCGCAATGAACGAAACAAGGTCAAAATAGTAACAGATGGTGCCATGCCTCCACTGGTTGAGCTCCTCAAGATGAAAAATAGCGGTATACGAGAATTAGCTACGGCTGCAGTCTTGACACTCTCAGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTTTCCTTGTTCAGATTCTCAAATCTGGAAGTGTTCAAGGAAAAGTTGACGCTGTTACAGCCCTCCATAATCTTTCTACCAGCAATGAGAATTCCATTGAACTTCTTGATCCAAGTGCTGTTTTCCCTCTGATCAACCTTCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTGCTTGAAATCCTTTCCAACTCCGAAGAAGGGCGAACCGCAATCTCAATTGCAGACGGTGGAATCTTAACGCTAGTTGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACATGCTGTAGGAGCTCTGCTATCTTTATGCCGAAGCTGCCGAGATAAATACCGTGAACTGATTCTTAAAGAAGGAGCGATTCCGGGTCTGTTACGTCTGACCGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCTCGTGTGCTACTGGATTTGCTCAGAGATTCTCCCCCAGAAAAGAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGGGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACGGTTATTGCAAGATATGGTTCAAAGGAGTGTGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGCACTCCTTCTATTCCTTCCACTTGA 1137 0.4732 MGEGENIEVETEAESETSSSWNLGKHTQIIELSEKLSDGNLSAKIEAAREIRKMVRKSSSSSKIRAKLASAGVIEPLVLMLSSSNIDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMKNSGIRELATAAVLTLSAAASNKPIIAASGAAPFLVQILKSGSVQGKVDAVTALHNLSTSNENSIELLDPSAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGALLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSVEHSMKCIQHRAASCTPSIPST* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02504 378 FunFam U-box domain-containing protein 4 5 370 - -
Phac8g02504 378 SUPERFAMILY ARM repeat 32 325 IPR016024 -
Phac8g02504 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 156 IPR000225 GO:0005515
Phac8g02504 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 155 197 IPR000225 GO:0005515
Phac8g02504 378 MobiDBLite consensus disorder prediction 1 20 - -
Phac8g02504 378 Gene3D - 15 169 IPR011989 -
Phac8g02504 378 SMART arm_5 228 269 IPR000225 GO:0005515
Phac8g02504 378 SMART arm_5 102 143 IPR000225 GO:0005515
Phac8g02504 378 SMART arm_5 144 184 IPR000225 GO:0005515
Phac8g02504 378 SMART arm_5 185 227 IPR000225 GO:0005515
Phac8g02504 378 SMART arm_5 61 101 IPR000225 GO:0005515
Phac8g02504 378 PANTHER U BOX DOMAIN-CONTAINING 28 312 - -
Phac8g02504 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
Phac8g02504 378 Pfam Armadillo/beta-catenin-like repeat 103 141 IPR000225 GO:0005515
Phac8g02504 378 Gene3D - 170 366 IPR011989 -
Phac8g02504 378 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 240 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02504 Phac-Chr8 34394958 34400086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02504 27 312 U-box Gene Family AT3G54790 37.979 1.00e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02504 K08332 - gmx:100782472 636.336