Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02496 ATGGGTGCTGTCGTAGAGTGTTACCCGCCGCCGCGCACGGCGGTGCTGTCTCTCAACACGCTGCCGCTAGGGTTCCGTTTCCGTCCCACCGATGAAGAGCTTATTGATTACTATCTGCGCTCGAAGATCAACGGAAACGGGGACGATGTTTGGGTTATCCGTGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCGGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCCAATGGGCACAGGTTGAACCGAGCTACGAGCCTTGGGTATTGGAAAGCAACGGGGAAGGATCGAAGGATTAAGTCTGGTTCCACTTTGATTGGAATGAAGAAGACTCTTGTTTTCTATACTGGTCGTGCACCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCGTATGTCCTTTGTCGCTTATTTAAGAAACATGATGAGAGTCTTGAAGCTTCAAATGGTGATGAGGTGGAACGGGCTGCTTCAACCCCTATGACTGCCAATCACTCTCCAGATGAAATACAATCTGATTCCTCTCTGGATCCAGCATCTTCCTCACAGATTACTGAAGGTGAAAAGCCTCTAACAGTTATCCCTGAGAACTCTGAAGAAGTAATATCCAACATTATAACTCCAGTTGACTCCCATAGTGATGGATGTGATGCTCGTGATGCACAAAATCAGATTGTAGAACTAGCTTCAGAGGATCAGGCATTTAACTTTGAGGATTTTTATGACCCAACAAACCAGCAATTAGATGACAAATTATTCTCTCCAGTCCATGCTCATTTCCCACCAGAAATTTACTATCAATCAGAACTTCAGTATGGTACAAATGACAATATGCCCGACTTTTTTGACTCGGTTAATTGGGATGCGATCTCCTATGATACTAGCAGTCTAGAGCCATGCTCATCCCTCCTCAATGTTAAGGATCATGGATCAGGCAGTGACTCAGATGTGGAAATGGCCAATATGACGAATCCGCAGGCATTGCATGGTTATCCTAAGGAGGCAGTTGAGCAGAAGAGCAATGTAGGATTATTTCAGAACAGTCCCGAGATGGCTTTCTCAAACGATGGTTCTATGGGGGAAGTGGACTATTCGACCAAGAATTGTGGGCAACTAAGAAACTTTGATGCGTTTAATAATGGTGGTACTGGAATCAGAATAAGGTCTCGTCAAGGACGAACTGAACAGCCAAACATGAATGGAATGGTACCATCACAAGGTAATGCACCAAGGAGAATACGGTTGCATGTTGGGCGTGGGCGTCCATTTGGTTCCGAGGAGGCGGCAAAAGATGGAAGTTGTGCATGTGCCCCAGAAGACCATAATTCAAAAACCATCAATACTAGGGAGTGGAAAGCTTCAGACAACCATGCTGCCGACGAGAGTTCCGCCGTTGCTGATGATGTGGATGAACGAGAGAAGGAATCTCCGGAGTCATCTGACTTAGGAAAGATCACTCAGCAGCATGTTGCAACTGCAGAATCCATCTCAAAAGACCATCTACAGGTTTCGTCTAACCGTGGCATGTGGTCTTATGTTCTTGGAGTTTCTGCAACTGTGTTGGTTTCAGTAATACTCGTTGTTAATATATGGGCATATGTGAGATCTTAA 1704 0.4601 MGAVVECYPPPRTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSLGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEASNGDEVERAASTPMTANHSPDEIQSDSSLDPASSSQITEGEKPLTVIPENSEEVISNIITPVDSHSDGCDARDAQNQIVELASEDQAFNFEDFYDPTNQQLDDKLFSPVHAHFPPEIYYQSELQYGTNDNMPDFFDSVNWDAISYDTSSLEPCSSLLNVKDHGSGSDSDVEMANMTNPQALHGYPKEAVEQKSNVGLFQNSPEMAFSNDGSMGEVDYSTKNCGQLRNFDAFNNGGTGIRIRSRQGRTEQPNMNGMVPSQGNAPRRIRLHVGRGRPFGSEEAAKDGSCACAPEDHNSKTINTREWKASDNHAADESSAVADDVDEREKESPESSDLGKITQQHVATAESISKDHLQVSSNRGMWSYVLGVSATVLVSVILVVNIWAYVRS* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02496 567 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Phac8g02496 567 MobiDBLite consensus disorder prediction 483 511 - -
Phac8g02496 567 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 251 - -
Phac8g02496 567 MobiDBLite consensus disorder prediction 483 517 - -
Phac8g02496 567 SUPERFAMILY NAC domain 14 171 IPR036093 GO:0003677|GO:0006355
Phac8g02496 567 MobiDBLite consensus disorder prediction 453 472 - -
Phac8g02496 567 MobiDBLite consensus disorder prediction 177 227 - -
Phac8g02496 567 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Phac8g02496 567 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Phac8g02496 567 MobiDBLite consensus disorder prediction 424 443 - -
Phac8g02496 567 MobiDBLite consensus disorder prediction 190 219 - -
Phac8g02496 567 FunFam Nac domain-containing protein 86 30 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02496 Phac-Chr8 34280874 34284983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02496 14 448 NAC Transcription Factor Family AT4G35580 42.391 9.55e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac8g02496 NAM 5.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02496 - - gmx:100778903 887.1