Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02445 ATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCATCGCAGATCAGCATCTGGAAGTGACATATTGTATGATTTAGAGCCACAAATTAACGGGGACCAAAAAGTCACTTTGAAAAGAGTCAAAAGAGATCGTGTGGAGTGCATGTGTGGAGCTGTGAGTGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACACATCATGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCGCATGATTCTGATAGGCATGTGGGTGATCGACACTTTCTGAGGTTTCAAAAGAGGTACCCTGTCATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAATAGTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGCATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTTCTTGTGGCCAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGCGAGCTATGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAAAACATGTTGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTTTCTTGGCTTTCACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGACAAGGCCCAGATTCTATCTCTTTGCAAAGTTCATCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAACAAACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCGCTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATCACTGTACAGTGAAGCTCTTACTTTGGCTGGAGAGCATTCTGAAGATTTTCGCCTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTGCCACTTGCTTCAAACTTTGCATTAATATTGGCATCCAAAGGAAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAAAATAAGTGGTTGTGAAGATGTAAATGCAACCGTGCCATCTGCAGAACTATCAAATGTTAGCCTTTCAGAAAATGACACAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAATTCTGTCAAATCTCTAATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAATGCTTATCGTGACAGTAGAACAGATCATAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAACAGAGCAAAGATTTCTCTACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCGGGAGCTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCTCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCAAAATTGTCAGCCTAATTGTGATGGTCCCCCTTGTGTTTTGTGCGAACTAGATGGATTGTTTCAGGATTATGAAGCAAGACTCTTCATTCTTAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAATGTTGCACTGAATCATTTCCTCTCAAAGCTATCACAATCTAGAAACAGTTCTACAACATCTGATATTGGTCATGAGGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGAGTCTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATTCAGATGGCTGTTTCCCGTCTGCACCTAAGGGCAAGCGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCAGCTAGCTCCAACTTTTCCCATGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGTTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAAATGCAATTTGAAAGTCCAAACAGTTCTTCATTCACACGAGAAACAACTGCAATGTCAAACTCTACAGAAGAGAAGGCTGTAATAGCTAAAACTGATGATGAAACATGCCCAGTCTGTCAAGAAAAGCTAGGGAATCAGAAGATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGGTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTGACAGCAGTGAAAAGTGTGAAGCATCCATTTGCGTCAAAGGATCATACGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTGTTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAAGAGAATGATACAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCGAATGGACTCAATCTTTTGGAAGCGCAGCATGTGGTTCTTGTAGAGCCATTGCTAAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAACAGAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGTTGTCTAGAGCACCTCTTACTATGCCAGAAAGTGAAGAAAATCTTGGCACAAACACAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 3915 0.4008 MGLGKTVELLACIFTHRRSASGSDILYDLEPQINGDQKVTLKRVKRDRVECMCGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTMAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHHGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDLSHDSDRHVGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNSTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVRAMEFTHKVFKQIMWRSSKKHVADELDLPSQEECLSWLSLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRQGPDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATSLYSEALTLAGEHSEDFRLDPLLNIHIHHNLAEILPLASNFALILASKGKQLSESSEFKMTKRHLIVKVDSCHVKRQKISGCEDVNATVPSAELSNVSLSENDTKEDQEFDNLSANSVKSLIAECEDSKQKYLSVFSSKLSAAQQEFQSSYIQVSNAYRDSRTDHNTFWWLEALHHAEQSKDFSTELIRKIEEAISGASSNSKSSRITARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDGLFQDYEARLFILKNERGGIISSAEEAVDFQKKNVALNHFLSKLSQSRNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRESVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIQMAVSRLHLRASEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKMQFESPNSSSFTRETTAMSNSTEEKAVIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKVHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTIDSSEKCEASICVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHAFTANNITFIRMKGGRKAHVAISQFRGKENDTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKQKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENLGTNTNLRHLPPSVAAAIAAEKRLNEQRT* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02445 1304 SUPERFAMILY FYVE/PHD zinc finger 47 119 IPR011011 -
Phac8g02445 1304 CDD PHD_TCF19_like 52 96 - -
Phac8g02445 1304 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1088 1259 IPR001650 -
Phac8g02445 1304 SMART ultradead3 29 294 IPR014001 -
Phac8g02445 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 336 IPR027417 -
Phac8g02445 1304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 962 1043 IPR013083 -
Phac8g02445 1304 Gene3D - 116 345 IPR038718 -
Phac8g02445 1304 Pfam Helicase conserved C-terminal domain 1086 1208 IPR001650 -
Phac8g02445 1304 CDD SF2_C_SNF 1082 1219 - -
Phac8g02445 1304 Pfam Zinc finger, C3HC4 type (RING finger) 991 1038 IPR018957 GO:0046872
Phac8g02445 1304 ProSiteProfiles Zinc finger RING-type profile. 991 1039 IPR001841 -
Phac8g02445 1304 SMART ring_2 991 1038 IPR001841 -
Phac8g02445 1304 SMART helicmild6 1116 1208 IPR001650 -
Phac8g02445 1304 CDD DEXQc_SHPRH 1 324 - -
Phac8g02445 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 1260 IPR027417 -
Phac8g02445 1304 Pfam SNF2-related domain 1 420 IPR000330 GO:0005524|GO:0140658
Phac8g02445 1304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1303 - -
Phac8g02445 1304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 115 IPR013083 -
Phac8g02445 1304 ProSitePatterns Zinc finger PHD-type signature. 51 117 IPR019786 -
Phac8g02445 1304 Gene3D - 1044 1288 IPR027417 -
Phac8g02445 1304 SMART PHD_3 50 118 IPR001965 -
Phac8g02445 1304 SUPERFAMILY RING/U-box 986 1043 - -
Phac8g02445 1304 Coils Coil 703 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02445 Phac-Chr8 33914120 33934901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02445 129 418 RAD5 or RAD16-like Gene Family AT5G43530 31.399 2.58e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac8g02445 SNF2_N 2.8e-74 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02445 K15710 - gmx:100776659 2323.12