Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02444 ATGGGTAGGCGAAAAAGCAAACCAAATCGAGCAGGCGGGATAATACTTGAGACAGATGCTTCTGCTGAGACAGAATTGAATAAACAAAATGTTGGAGAAGGAGGGGAAGATGCAAAAGGTAGTTATGGTAACATCGATAAGCCTTATTTTGTGGAGGTTGCTCGGTTGGATTGGTTGTCGAGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAAATTGAGTGAAGGTTTTTCTGGTTTTGAATTGTCTGAGGATTTTTGTCGGGATCAGCAGTATTTGTTAAGATTTCGAGTATGTAATGTCAGTAATGTTCTTGGTCGAATCAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTAGAGTTTGCAAGAAGAGTTACGGTTGACCATGTGGAAACATGTACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTTGGGGTAAGGCTTTCTGAGGAAATTTCCTCTGTGAGGGTAAGGGTTGAGGTATTAAAGAGCGCCTTTAATGCATGTGAGTCGCTTCTTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGGCTTTGGAAGTTAGGTATGGGTTCTTTAGCTGTATGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAAGGCAAGGAAACATGCAAGATTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCTGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCATTATGCATACCTGTGGATTTTCTGGACACCAGTTCACAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCATCGCAGATCAGCATCTGGAAGTGACATATTGTATGATTTAGAGCCACAAATTAACGGGGACCAAAAAGTCACTTTGAAAAGAGTCAAAAGAGATCGTGTGGAGTGCATGTGTGGAGCTGTGAGTGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATGGCTGTGAGGGATGGAGAATATGTATGTCATATGTGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACACATCATGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACATCTTTTTCCAATGCGTCTGTGATGGATATCAGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCGCATGATTCTGATAGGCATGTGGGTGATCGACACTTTCTGAGGTTTCAAAAGAGGTACCCTGTCATCCCAACTCTTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAAAGTAATAGTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGCATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTATATGGACTTCTAAGGTTTCTTGTGGCCAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGCGAGCTATGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAAAACATGTTGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTTTCTTGGCTTTCACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGACAAGGCCCAGATTCTATCTCTTTGCAAAGTTCATCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAACAAACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCGCTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATCACTGTACAGTGAAGCTCTTACTTTGGCTGGAGAGCATTCTGAAGATTTTCGCCTGGATCCTTTGTTAAATATTCACATTCATCATAATCTTGCTGAAATACTGCCACTTGCTTCAAACTTTGCATTAATATTGGCATCCAAAGGAAAACAATTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAAAATAAGTGGTTGTGAAGATGTAAATGCAACCGTGCCATCTGCAGAACTATCAAATGTTAGCCTTTCAGAAAATGACACAAAGGAGGATCAGGAATTTGATAATTTATCAGCCAATTCTGTCAAATCTCTAATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAATGCTTATCGTGACAGTAGAACAGATCATAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAACAGAGCAAAGATTTCTCTACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCGGGAGCTTCAAGCAATTCAAAGTCATCAAGAATAACTGCTCGTTTCCGAAGCATAAGCTCTCTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCAAAATTGTCAGCCTAATTGTGATGGTCCCCCTTGTGTTTTGTGCGAACTAGATGGATTGTTTCAGGATTATGAAGCAAGACTCTTCATTCTTAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAATGTTGCACTGAATCATTTCCTCTCAAAGCTATCACAATCTAGAAACAGTTCTACAACATCTGATATTGGTCATGAGGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGAGTCTGTCTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATTCAGATGGCTGTTTCCCGTCTGCACCTAAGGGCAAGCGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCAGCTAGCTCCAACTTTTCCCATGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGTTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAAATGCAATTTGAAAGTCCAAACAGTTCTTCATTCACACGAGAAACAACTGCAATGTCAAACTCTACAGAAGAGAAGGCTGTAATAGCTAAAACTGATGATGAAACATGCCCAGTCTGTCAAGAAAAGCTAGGGAATCAGAAGATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGGTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATTCACAGAATGAATCTTCCAATCTTTCAGTGCTGCATACAATTGACAGCAGTGAAAAGTGTGAAGCATCCATTTGCGTCAAAGGATCATACGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTGTTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAAGAGAATGATACAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCGAATGGACTCAATCTTTTGGAAGCGCAGCATGTGGTTCTTGTAGAGCCATTGCTAAATCCAGCTGCTGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAACAGAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTCTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGTTGTCTAGAGCACCTCTTACTATGCCAGAAAGTGAAGAAAATCTTGGCACAAACACAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5007 0.402 MGRRKSKPNRAGGIILETDASAETELNKQNVGEGGEDAKGSYGNIDKPYFVEVARLDWLSSEHLDISEVVLRDLKLSEGFSGFELSEDFCRDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFARRVTVDHVETCTVLLSGVFDGPDEGVTGLLHLASLKFVTLRPVLGVRLSEEISSVRVRVEVLKSAFNACESLLDTSRQLWKKSMVNVMSWLRPEIMALEVRYGFFSCMKMDGDPQTEMVDDTCKARKHARFDPAGLYEAIKPSKAEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCIPVDFLDTSSQMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDILYDLEPQINGDQKVTLKRVKRDRVECMCGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTMAVRDGEYVCHMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHHGSLKTCVYEGVRETSFSNASVMDISDLASADIVLTTYDVLKEDLSHDSDRHVGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNSTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVRAMEFTHKVFKQIMWRSSKKHVADELDLPSQEECLSWLSLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRQGPDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATSLYSEALTLAGEHSEDFRLDPLLNIHIHHNLAEILPLASNFALILASKGKQLSESSEFKMTKRHLIVKVDSCHVKRQKISGCEDVNATVPSAELSNVSLSENDTKEDQEFDNLSANSVKSLIAECEDSKQKYLSVFSSKLSAAQQEFQSSYIQVSNAYRDSRTDHNTFWWLEALHHAEQSKDFSTELIRKIEEAISGASSNSKSSRITARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCVLCELDGLFQDYEARLFILKNERGGIISSAEEAVDFQKKNVALNHFLSKLSQSRNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRESVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIQMAVSRLHLRASEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKMQFESPNSSSFTRETTAMSNSTEEKAVIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKVHNWVMCPTCRQHTDFGNIAYAVDSQNESSNLSVLHTIDSSEKCEASICVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHAFTANNITFIRMKGGRKAHVAISQFRGKENDTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKQKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENLGTNTNLRHLPPSVAAAIAAEKRLNEQRT* 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02444 1668 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Phac8g02444 1668 Gene3D - 481 709 IPR038718 -
Phac8g02444 1668 Pfam Helicase conserved C-terminal domain 1450 1572 IPR001650 -
Phac8g02444 1668 SMART ultradead3 285 658 IPR014001 -
Phac8g02444 1668 CDD DEXQc_SHPRH 289 688 - -
Phac8g02444 1668 Gene3D - 345 397 IPR038718 -
Phac8g02444 1668 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Phac8g02444 1668 Coils Coil 1067 1087 - -
Phac8g02444 1668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1326 1407 IPR013083 -
Phac8g02444 1668 SUPERFAMILY RING/U-box 1350 1407 - -
Phac8g02444 1668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1452 1623 IPR001650 -
Phac8g02444 1668 CDD PHD_TCF19_like 416 460 - -
Phac8g02444 1668 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Phac8g02444 1668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 480 IPR013083 -
Phac8g02444 1668 SMART PHD_3 414 482 IPR001965 -
Phac8g02444 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1623 IPR027417 -
Phac8g02444 1668 Gene3D - 1408 1651 IPR027417 -
Phac8g02444 1668 ProSiteProfiles Zinc finger RING-type profile. 1355 1403 IPR001841 -
Phac8g02444 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 687 IPR027417 -
Phac8g02444 1668 CDD SF2_C_SNF 1446 1583 - -
Phac8g02444 1668 SMART helicmild6 1480 1572 IPR001650 -
Phac8g02444 1668 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 8 1667 - -
Phac8g02444 1668 SMART ring_2 1355 1402 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02444 Phac-Chr8 33914120 33934901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02444 493 782 RAD5 or RAD16-like Gene Family AT5G43530 31.399 2.97e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac8g02444 SNF2_N 3.9e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02444 K15710 - gmx:100776659 2951