Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02419 ATGGAACTTTATGATCATGATTTCTTGGAGGAATCTACAGCTCTAAGAAGAGAACCATGGGATACCAATCCACGTTCACAAGAAAACCAGCCTTTCTCTAATGCCTGGAGTTTTGATTGTTTTGATCAAAACTATCAAGCTTTTCCTTCAAATTCTTTCTGTTTCCAACAAATTCCTCAGAGTTACAATTTCGACTACACCTTCAATGAAATCTATAGTTCTTTGCTTGATGAATTCTCTGCACCCCAAATTGTAGATTCATCTTATAACACCCCTCCATTTGTGGCTCATGAAGATTATCCACTGTCCATGATGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCTACATGCAAAATGGAGCCAAGCCATTCCCCTGAAAGGCCTGTTTTCAACACAGATTCATGTGTGGAAAGAAAGAATAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAATCTAATGGCAGAGAGGAGAAGAAGGAAGAGATTAAACGACAGGCTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATCGATTACATGAAAGAGCTCTTGGAAAAGATTAACAATTTGAAGCAAGAAATAGAAGTGGATTCCAACACGGCTACCATTTTCAAGGATTCAAAGCCAAACGAACTCTTAGTAAGAAAGTCTCCTAAGTTTGATGTGGAGAGGAGAAATGGCAATACAAGGGTGGAGATCTGCTGTGCAGGGACGCCAGGCTTGTTGGTGTCTACAGTAAACACATTGGAAACATTAGGTCTCGAGATCCAGCAATGCGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGGTACATTAG 903 0.4064 MELYDHDFLEESTALRREPWDTNPRSQENQPFSNAWSFDCFDQNYQAFPSNSFCFQQIPQSYNFDYTFNEIYSSLLDEFSAPQIVDSSYNTPPFVAHEDYPLSMMEEEDPGLLGEELHCLDLQATCKMEPSHSPERPVFNTDSCVERKNNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEVDSNTATIFKDSKPNELLVRKSPKFDVERRNGNTRVEICCAGTPGLLVSTVNTLETLGLEIQQCVISCFNDFTVQASCSEVH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02419 300 SMART finulus 163 212 IPR011598 GO:0046983
Phac8g02419 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Phac8g02419 300 Gene3D - 165 239 IPR036638 GO:0046983
Phac8g02419 300 Coils Coil 196 223 - -
Phac8g02419 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Phac8g02419 300 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
Phac8g02419 300 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 34 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02419 Phac-Chr8 33598267 33600176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02419 56 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.188 8.97e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g02419 HLH 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02419 - - vra:106764382 534.258