Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02398 ATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGATAATTCGACGAGTAGGCAAGTCACGTTCTCGAAGCGAAGGAACGGTTTGCTAAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTTGGAGTTATGATTTTCTCCAGTACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCGGTAATTGACCGATACAATAAATCAAAAGAAGAAAATTTTCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGCAAAATCATGGGGGAAGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAAGCAATTAGAAATAAGCCTTCGTGGTGTCCGTATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAACTAAATCGAAAGGCAAACCTCATGCGCCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTCTCAAGAAAACAAGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTGACAAATGGTCTAGGCATGGGAGAGGATTTGCAATTGCCCGTGAATCTCCAGCTAAGCCAGCCACAACAACAACAACACTACAAGGCTCCTTCAGGAATTTCGAAATTGGGCAGATTGCAATTGCATTGA 726 0.4063 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENFQLGSSTSEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLEKQLEISLRGVRMKKDQLLMDEIQELNRKANLMRQENVELYKKVNLISQENKELKKKVYGTKDDSETNRDYVLTNGLGMGEDLQLPVNLQLSQPQQQQHYKAPSGISKLGRLQLH* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02398 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Phac8g02398 241 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Phac8g02398 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g02398 241 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Phac8g02398 241 Coils Coil 142 183 - -
Phac8g02398 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phac8g02398 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 Coils Coil 86 106 - -
Phac8g02398 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 207 - -
Phac8g02398 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac8g02398 241 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02398 Phac-Chr8 33426158 33445861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02398 1 230 MADS-box Gene Family AT2G22630 61.017 2.01e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac8g02398 K-box 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02398 K09264 - gmx:100812413 405.601