Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02393 ATGGCCTCACCAGCAGTGAAATTGTATATGGAAGACGATCAAGTGGTTATGGACAATGGCATAGTGCAAGTGTATTTATCCAACCCTGGTGGATTTGTTACTAGAATTCAGTATAATGGCATTGATAATCTGCTTGAAACTCGTAACAAAAGTGGAGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACAGGAACAACTGGGACATTCCAAAGGATTGTGGGAGAAAGTTTCAAAATTATAATGGAAAATGAGGAAGAGGTTGAAATCTCGTTCACAAGTACGTGGGATCCATCTCTGGAGGGAGAGAGAGCTCCTCTTAATATTGATAAGAGGTATGTGATGCTTTGTAACTCCTCAGGATTCTACTCCTACACCATCTTTGAACACCTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAGCTTAGTAAAGACAAGTTTCATTACATGGTGGTTTCGGATAATAGACAAAGATTTATGCCTCTCCCTGATGACAGATTACCTAAAAGAGGAGAAGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTATGGTTCACGGGTGGATAAGTTCTGAATCTGAAACCGATCCATTTATAGGGTTTTGGGTAATCATACCAAGCAATGAGTTTCGATCCGGTGGTCCAATGTTTCTGAGTGCTCATTACGCAGGAGAAGATATAGTTCTGAAACTCCAACCAAACGAGCCATGGAAGAAAGTTTTTGGTCCAACTTTTGTTTATCTTAACACTTTATTAGACGGTGATGACCCGCTTCTGCTATGGGAAGATGCTAAATATAAGACGAACGCAGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCCTCCGAAGATTTTCAGAAGTCTAGCCAACGGGGCAGTGTCTGCGGCACATTACTAGTCAAAGACAGGTTTTTAAGTGATGAGAAGATAATAGCAGAAGGCGCTTATATAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGATACTTCTCAATCAACAACGTACGCAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGACTATTGGAGCAATGTTCTCCTCACCATAACACCAGAATATCCAGGTTGTAAAATTGAAGTTGGAGAGGTGATTTACGAGGCTCCAAGAGATGGGCCAACACTATGGGAGATAGGCATTCCAGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAACTACATCAACAAGCTTTTTGTCCATCATCCAGACAAGTATAGGCAATATGGGTTGTGGGAAAGGAAGAAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGATGATACAGAGGCAAGTAAAATCTACAAGTTGCGATTGGCCCTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAGAACAAGATCCTCCTCTGCTGACTACAGGGGTGTTTGGGAAGGACTCTGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTGTTCAACATTGATGTGCCTGGTTTTCTGCTAGAAAAAGGTGTCAACACTGTGTTCTTAACTCAAACTATGGCTACTGGTCGCTTGGCACTCTTTCAGGGAATAATGTATGACTATATACGCCTAGAAGGTCCTAACCCTTTTTCTCCATAA 1752 0.4241 MASPAVKLYMEDDQVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLETRNKSGDRGYWDVVWSVAGSTGTTGTFQRIVGESFKIIMENEEEVEISFTSTWDPSLEGERAPLNIDKRYVMLCNSSGFYSYTIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVVSDNRQRFMPLPDDRLPKRGEVDDKYQYSSENKDLMVHGWISSESETDPFIGFWVIIPSNEFRSGGPMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPLLLWEDAKYKTNAEVQSWPYDFPASEDFQKSSQRGSVCGTLLVKDRFLSDEKIIAEGAYIGLAPPGEAGSWQRECKGYQFWSKANEKGYFSINNVRSGDYNLYAWVPGFIGDYWSNVLLTITPEYPGCKIEVGEVIYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLFVHHPDKYRQYGLWERKKEDGSYQGTTWQIKFNLDDTEASKIYKLRLALASANVSELQVRVNDPEQDPPLLTTGVFGKDSAIARHGIHGLYWLFNIDVPGFLLEKGVNTVFLTQTMATGRLALFQGIMYDYIRLEGPNPFSP* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02393 583 CDD RGL4_C 416 576 - -
Phac8g02393 583 Gene3D - 412 576 - -
Phac8g02393 583 SUPERFAMILY Starch-binding domain-like 301 386 IPR013784 GO:0030246
Phac8g02393 583 Pfam Polysaccharide lyase family 4, domain III 414 575 IPR029411 -
Phac8g02393 583 CDD RGL4_M 302 402 IPR029413 -
Phac8g02393 583 Gene3D - 299 391 - -
Phac8g02393 583 Pfam Rhamnogalacturonate lyase family 5 181 IPR010325 -
Phac8g02393 583 SUPERFAMILY Galactose-binding domain-like 411 576 IPR008979 -
Phac8g02393 583 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 179 459 - -
Phac8g02393 583 FunFam Rhamnogalacturonate lyase B 299 401 - -
Phac8g02393 583 Gene3D - 5 241 IPR014718 GO:0030246
Phac8g02393 583 CDD RGL4_N 14 262 - -
Phac8g02393 583 Pfam Polysaccharide lyase family 4, domain II 325 386 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02393 Phac-Chr8 33360404 33369597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02393 1 578 Polysaccharide Lyase AT1G09910 53.344 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02393 K18195 - gmx:100815677 999.964