Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02306 ATGGGCATCCACATGGAATGCCCTGCACCTCCACCTGCACCGCGGTTCATGAATCTGGATCATGATCGTGCATTTTTTTTCCTTCTCATCCTCCTTCTCGTGCCGCCGGTCACGGCACAGTTTCAAAACCCGCCTCCGTCACCGCCGCAGTTGGATCCTTTCACGAGACTGAGATTCGACAAGACCATGGCTGCGGTTCTGGTGATCCTCGTAGTGGTCTTCTTTGCGTTGGGATTCGTGTCCATCTACACGCGCCAATGCGCTGAGCGGCGGATCAGAGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGACCGGCGGCAGCATCACGGGCTTGACAGGGCGATAGTGGACACGTTTCCGACGTTCGTGTACTCCGAGGTTAAAGCCCTGAAGATCGGGAGGGCCACGCTGGAATGCGCTGTTTGTCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCCAAATGCTGCCACGTGTTCCATCCCGATTGCATCGATGCATGGTTGGTGAATCATTCCACTTGTCCCGTTTGCCGCGCCAACCTGGCGCCGAAGCCCGAGGACGCGCCTCCTCCCGTTGAGATTTACATTCCAGATTCGGCCCAGCCCAATGGGCCCAACGCAGAACCCGATTATGATCCCAATTACATCAACGCGGTCGATGAAGGTGAAGAAGGTGAGCGAAACAGAATAGTTACGGAGCCTCTTAGTTTAGATGATCGGAACCGGACCCGTCCAGTTCGGTCTAGATCGACCGGTTTTGGAACTTCAAGGCTGTTTCCGCGCTCTCATTCAACGGGTCATTCTCTGGTTCGACCGGGAGAGGACTGCGAGCGGTTCACACTGCGGTTGCCAGAGGATGTGCGGAACCGGCTCATGAGTTCTGGGATGCTGAACCGGACCAAGAGTTGTGGGGTGACGTGGCAGCGGCAGAGTAGTGGGAGGAGGGATTACAGAACGAGGAGTGTGGGGAGAAGCTATCTGCAATACGAGCGGTTCGGTGGGGAAGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACCGGTTCGGTGAAATCCCCAAAGTCAACGAGGATGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATCTTTTGTTTTGCAGAGATTGA 1167 0.5681 MGIHMECPAPPPAPRFMNLDHDRAFFFLLILLLVPPVTAQFQNPPPSPPQLDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMDRRQHHGLDRAIVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPPPVEIYIPDSAQPNGPNAEPDYDPNYINAVDEGEEGERNRIVTEPLSLDDRNRTRPVRSRSTGFGTSRLFPRSHSTGHSLVRPGEDCERFTLRLPEDVRNRLMSSGMLNRTKSCGVTWQRQSSGRRDYRTRSVGRSYLQYERFGGEGRLDRWGFMWTPPFWGRTGSVKSPKSTRMKDEVDVGERSSDLLFCRD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02306 388 PANTHER RING FINGER DOMAIN-CONTAINING 37 191 - -
Phac8g02306 388 MobiDBLite consensus disorder prediction 246 277 - -
Phac8g02306 388 FunFam E3 ubiquitin-protein ligase ATL6 84 190 - -
Phac8g02306 388 SUPERFAMILY RING/U-box 121 198 - -
Phac8g02306 388 Pfam Ring finger domain 141 184 IPR001841 -
Phac8g02306 388 SMART ring_2 142 183 IPR001841 -
Phac8g02306 388 CDD RING-H2_EL5-like 141 184 - -
Phac8g02306 388 MobiDBLite consensus disorder prediction 253 269 - -
Phac8g02306 388 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Phac8g02306 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 190 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02306 Phac-Chr8 31911238 31913239 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02306 25 379 Rapid Response to Elicitors AT3G05200 42.328 4.89e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02306 K10664 - gmx:100815982 588.571