Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02303 ATGAGCATGCAAAAAGAGAGTCCTCTCATTAGACTCCACATTTTCGACCAAGGTCATGCATGGCTCGCTCTTTTGCACCTTCTCATTCACATGTCACCGCCAGTAACCGGTCAATCGGTAACTCCGACGATAGGACCCGACGACAACAAATCCGTGATCGCCATCATGGTCATCATCGCTATAATGTTCCTCATCTCAGCCTTCATCTCTCTCTACTCTCGCAAATGCTCCGACCGACAAGCACAGACACGTGGCATTCTCGACCTCGCCGCATCCACAGGCGCAACCGGTAATCCGTCGTCGCAAAGCGAACCCAACGGTCTCAGCCAATCCACCATAGAAACCTTCCCCACATTCCTCTACTCCGACGTGAAGGGTTTCAAAATCGGAAAAGACACGCTAGCATGCGCTGTGTGCTTGAGCGAGTTCCAAGACCACGAAAACCTTCGCGTGATCCCCAAATGTTGCCACGTGTACCACCCCAATTGCATCGACCTGTGGTTAACGTCTCACTCCACTTGTCCAGTGTGTCGCGCCAACCTCGTTCCACAACCTGAAGACATGAACATGAACACGAACATGCTACCAATGTTGTCCATTCAGGTACCCGATGAAGATGAAGATGAACATCAAAGTGGTGAACATGAACAAGAGAGTGTTATCTGTGAGGAAGGAAAAAGAGGCCATGATGACGTGGACTCGCCGAAGGTGGATATGCTTCGGAGGATTCACACATTGCATCAGAGCCGTCCATTAAGGTCAAGATCCACGGGGTTCTTATCCACTCTCTTGTTTCCGCGATCGAACTCAATGGGGCAATTGGCGCAGCCAGGGGAGAACTATGAGAGGTTTACGCTAAGGTTACCGGAGGAGATACAAAGCCAGATGGCGAACTCCAGGCTTAAGCGTGCGAATAGTTGTGCATGCTTTACGAGAATGAGCAGTGGCACGTGGGGGTATAGAACGAGAAGCGTGGGGAGTGGACGTGGGAGAGGGTGTGTGCAGTATGAGAGGTTCAATGGTGAGGAACAATGGGGTTTCTCTTTGACACCACCGAGCCTCGTTAAAAACGATTCGAATAGATCCTCCAGAAAATCATTGGTTCAATGTTCAGGTGTGGTGTTGGATTATAATCCTAATGAATGA 1146 0.4991 MSMQKESPLIRLHIFDQGHAWLALLHLLIHMSPPVTGQSVTPTIGPDDNKSVIAIMVIIAIMFLISAFISLYSRKCSDRQAQTRGILDLAASTGATGNPSSQSEPNGLSQSTIETFPTFLYSDVKGFKIGKDTLACAVCLSEFQDHENLRVIPKCCHVYHPNCIDLWLTSHSTCPVCRANLVPQPEDMNMNTNMLPMLSIQVPDEDEDEHQSGEHEQESVICEEGKRGHDDVDSPKVDMLRRIHTLHQSRPLRSRSTGFLSTLLFPRSNSMGQLAQPGENYERFTLRLPEEIQSQMANSRLKRANSCACFTRMSSGTWGYRTRSVGSGRGRGCVQYERFNGEEQWGFSLTPPSLVKNDSNRSSRKSLVQCSGVVLDYNPNE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02303 381 FunFam E3 ubiquitin-protein ligase ATL6 97 184 - -
Phac8g02303 381 Pfam Ring finger domain 135 178 IPR001841 -
Phac8g02303 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 185 IPR013083 -
Phac8g02303 381 CDD RING-H2_EL5-like 136 178 - -
Phac8g02303 381 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Phac8g02303 381 PANTHER RING FINGER DOMAIN-CONTAINING 40 187 - -
Phac8g02303 381 SMART ring_2 136 177 IPR001841 -
Phac8g02303 381 SUPERFAMILY RING/U-box 130 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02303 Phac-Chr8 31762662 31763807 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02303 51 364 Rapid Response to Elicitors AT3G05200 34.535 3.15e-46 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02303 K10664 - gmx:100814384 532.332