Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02301 ATGGCCAACAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCACAAACCAAACTCAAACACAAGATTGCTATGGCTTATGTGACCCTGCATGCCCTTACAACTGTTATTCTAACCAAGACTACTTCTTCTCTCCACCACCACCATCTATTTTACACTCAACACAAGTTAACCACATACCCTCCTATTTGATCATCCTCGGGACTCTCTTCATGGTCATTTTTGTTGTTATTGGTTTCTACGTGATCAAAGTGAAGTGCTATGCTGCATGGTGTGGGTGGAGGCACAACGGATCCCTTCCTTCTCAATCAGACACCACCACTGAGGAGTTTCTCAACGAGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAGAAACGAAGGTTTGGTTGAAGGAACCGAGTGTTCGGTGTGCTTGAACGAATTCCAAGAGGAAGAGACCTTGCGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATTGACACTTGGTTGAGATCACACATCAATTGTCCTCTTTGTCGTGCCGGTATTGTCTCTAACAGTGTCACTTCTGAAGCACCCGTGTCGAATTTGGAGCAAGAGAATGCGAATTTGGGAAGAAATCAAGAGACCCTTATTGAGAGTTCAAGGAATGAAGGCTTGTTAAGCAGCAACACGGTTGCAGGGGAATCAAGTGAAGCACTACAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGATCAAACTCAGAACCATCACGTTCTGGATATAGAGATTCACTCAGAAACGGGGTCTGTTTCAACCACAGACTCTGAAAGCCATCATGTTGGTGATGATCATAAACATGATGAAATACACTTGCAACCTGTTAATCAATGGAAGCAAGAGCAAGATGGTGATTACTGCCAAAACACGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGACTCTAACTTCCAGAGGTTGCATGACTTTAAACGCTATGCTCCATTCATCCCTACTAGAATTTTCAATCTGTTAG 1131 0.4385 MANKLRKLFPDETTTTNQTQTQDCYGLCDPACPYNCYSNQDYFFSPPPPSILHSTQVNHIPSYLIILGTLFMVIFVVIGFYVIKVKCYAAWCGWRHNGSLPSQSDTTTEEFLNENQVDHPVWLIATVGLQQSVINSITVCKYKRNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHINCPLCRAGIVSNSVTSEAPVSNLEQENANLGRNQETLIESSRNEGLLSSNTVAGESSEALQLVDESNSKDRVHDQTQNHHVLDIEIHSETGSVSTTDSESHHVGDDHKHDEIHLQPVNQWKQEQDGDYCQNTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRTLTSRGCMTLNAMLHSSLLEFSIC* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02301 376 SUPERFAMILY RING/U-box 145 202 - -
Phac8g02301 376 FunFam RING-H2 finger protein ATL54 129 202 - -
Phac8g02301 376 Coils Coil 210 230 - -
Phac8g02301 376 Pfam Ring finger domain 153 196 IPR001841 -
Phac8g02301 376 CDD RING-H2_EL5-like 153 196 - -
Phac8g02301 376 PANTHER RING-H2 FINGER PROTEIN ATL16 43 350 IPR044600 GO:0016567|GO:0016740
Phac8g02301 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Phac8g02301 376 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Phac8g02301 376 SMART ring_2 154 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02301 Phac-Chr8 31664745 31666607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02301 4 206 C3H Transcription Factor Family AT1G72220 46.753 3.12e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02301 - - gmx:100805705 579.711