Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02262 ATGGTGCAGCGTCTTACCTACCGCAAGTGCCATAGCTATGCCACAAAATCCAACCAGCACAAGGTCGTTAAGACTCCCGGTGGTAAGCTGGTTTACCAGAGTGCGAAGAAGAGGGCCAGTGGACCCAATGCTGTTAGAGAAAGAACTATTCGAGCTTTCTTGGTTGAAGAGCAAATGATTATGGAAAAGGTCTTGAAGATCCAAAAGACCAAGGAAAAGCAAGCACTGAAGGGAACGGGGTACCTGACTGCGTGCTTTGCCTTGATGGTTGGACCCCTAGGTCGTGTTGTTGGTGTAGAGCATATTCCTGAATTGGTTTCTTTTTCGATAGAGTATATTCAGAAAAGCGCTGCTGCTACACAATTGAAAGATGGTTCCCTTTCTGATCATGCTGGTGATGGGAGAGAAGTTTGGCCACAGTTTGCACCTTATGATGCCATTCACGTTGGAGCAACAACACTAGAAATTCCCAATCCACTTATTGACCAGTTGAAGCCTGGATGTAGAATGGTGGTTCTTGTCAGAAACATATTTCAAGATTTAAAGTATTCAAGGGAGCCAAACAATCCCACTAAGTCTTGCAAGGCTAGAGGCGCCGACCTTAGGGTTCATTTCAACAACACTAGGGAAACTGCATTTGCAATCAGGAAGTTGTCCCTGGTTAAGGCTAGAAGGTACTTAGAAGATGTTCTTGCCCACAAACAAGCCATTCCGTTTAGATGTTTCTGTCGTGGTGTTGGAAGGACATCCCAAGCAAAGAGTAGACACTCAAATGGCCAAGGAAGGTGGCCTGTCAAATCAGCAAAATTAATCCTTTATTTGCTTAAAAATGTCGAGAGCAATGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTTTACATTTCCCATATCCAAGTCAATCAAGCGCAAAAGCAAAGACGCCGAACATACCGAGCCCATGGAAGAATCAATCCTTATATGTCATCCCCGTGCCACATAGAATTGATATTGTCGGAAAAGGAAGAACCTGTCAGGAAGGAGCCCGAGACAAATTTGGCAACAAGCAAGAAGTTCCAAGATCTATGA 1065 0.4451 MVQRLTYRKCHSYATKSNQHKVVKTPGGKLVYQSAKKRASGPNAVRERTIRAFLVEEQMIMEKVLKIQKTKEKQALKGTGYLTACFALMVGPLGRVVGVEHIPELVSFSIEYIQKSAAATQLKDGSLSDHAGDGREVWPQFAPYDAIHVGATTLEIPNPLIDQLKPGCRMVVLVRNIFQDLKYSREPNNPTKSCKARGADLRVHFNNTRETAFAIRKLSLVKARRYLEDVLAHKQAIPFRCFCRGVGRTSQAKSRHSNGQGRWPVKSAKLILYLLKNVESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPETNLATSKKFQDL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02262 354 MobiDBLite consensus disorder prediction 335 354 - -
Phac8g02262 354 Gene3D Ribosomal protein L22/L17 186 353 IPR036394 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 FunFam 60S ribosomal protein L17 180 353 - -
Phac8g02262 354 PANTHER 60S RIBOSOMAL PROTEIN L17 182 350 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phac8g02262 354 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 Pfam Ribosomal protein L34e 1 45 IPR008195 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 NCBIfam 50S ribosomal protein L22 183 333 IPR005721 GO:0003735|GO:0006412|GO:0015934
Phac8g02262 354 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Phac8g02262 354 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 77 195 - -
Phac8g02262 354 ProSitePatterns Ribosomal protein L22 signature. 306 330 IPR018260 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 SUPERFAMILY Ribosomal protein L22 182 333 IPR036394 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 Gene3D - 40 75 - -
Phac8g02262 354 CDD Ribosomal_L22 194 330 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 Gene3D Vaccinia Virus protein VP39 76 185 IPR029063 -
Phac8g02262 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 78 184 IPR029063 -
Phac8g02262 354 Pfam Ribosomal protein L22p/L17e 196 331 IPR001063 GO:0003735|GO:0005840|GO:0006412
Phac8g02262 354 Gene3D - 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02262 Phac-Chr8 30901258 30903349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02262 181 350 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 83.529 1.66e-103 300