Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02258 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACCACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGTGAGATTCTTGAAGCTGTCATTATCACTGATAAGAACACTGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTGCTGATCCAAACCCAGTGATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTCGGAAGACCTAGACCATCACCACCAAGAGGAAGAGGAACATTCCAAGGAGGAGCACCGGGAACAGCTTCATACAGTGGTGTGCCGGCGGCTGGACCGTCAGCACTAGCACCGCCGCCACCACCACCACCACCACCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCATCAAGCCACATTGTATAACCCACAAATTCAGCAACCACAATACTACCAACAACTCTATGGACCATCCTCCTCCACCATGGCTTCCCCATATTACTATGGCTATTCTGTGCAAGCACCAAGAGGTACCTTTTCTACACCCCAACCACATCGCATACCAGCTGGACCCTCTTATCTATACTACCCTACACCAATGGAAGGCTCATTTTCTGCATACCGTCCACCACCTCAATTGCAACAACTTCCAATAAGGCAACCCCCTCCTTCCCCTAGTGGTACTATTCCTTTCTCTTCTCTACTAACTTAA 771 0.4864 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGEILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGAPGTASYSGVPAAGPSALAPPPPPPPPPLVYPPYGYPTYTPDYGYHQATLYNPQIQQPQYYQQLYGPSSSTMASPYYYGYSVQAPRGTFSTPQPHRIPAGPSYLYYPTPMEGSFSAYRPPPQLQQLPIRQPPPSPSGTIPFSSLLT* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02258 256 SUPERFAMILY RNA-binding domain, RBD 9 117 IPR035979 GO:0003676
Phac8g02258 256 MobiDBLite consensus disorder prediction 234 248 - -
Phac8g02258 256 SMART rrm1_1 17 89 IPR000504 GO:0003723
Phac8g02258 256 MobiDBLite consensus disorder prediction 225 256 - -
Phac8g02258 256 Gene3D - 3 111 IPR012677 -
Phac8g02258 256 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Phac8g02258 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Phac8g02258 256 PANTHER BOULE-RELATED 6 240 - -
Phac8g02258 256 CDD RRM_RBM24_RBM38_like 16 91 - -
Phac8g02258 256 MobiDBLite consensus disorder prediction 90 136 - -
Phac8g02258 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02258 Phac-Chr8 30840398 30845721 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02258 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 1.15e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02258 K25006 - gmx:100788516 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g02258 8 30840398 30845721 Phac8g02258 8 30840398 30845721 ECH