Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02193 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACTCCACCAATCGACAAGTTACATTCTCAAAGCGAAGAAATGGCCTCATCAAGAAAGCCTACGAGCTTTCAATCCTATGTGACATTGATATTGCCGTCATAATGTTTTCTCCCTCCGGTCGTGTCAACCACTTTTCCGGTAGGAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTCCCAGAGCTACCGTACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTCAGGACACTTCAGCAACTGAGGAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATACGAACCCGACCCATTAAAGATGTCATCAATGGCAGATCTCGAAAACAGTGAAAAGCACCTTGTAGATGTCTTGACACGAGTCATGCAAAGAAAGGAATACTTAATGAGCCACCATCTATCTTCGTTTGATCCATCTAGTATTCAGGGAATACCTACCTCTTTCGACAATGTAGGTTGGTTGCAGGATGGGAGTCAAAATCATGCTCAGATTTTTGATGGTTCTGCTCCTTTAGATCCACTCAGGGACTTATCTTCGACAGTGTATGGTTCGTTTTCCCAAGGGACGAGTTCAAACGCTGATCCACGAGGCATGGGTGAGTGTCACGTGTCAAATCCAAGTGATGGGACTCTTCAACCCTGGCCTCAAGGGTACACATTGTATCCTCATCATCATATTCAGCATGACATGGTGGGACCCGACATGCCAGATATGATGCCACATGCACAGGTGAACATACCAATCACTGCCTCACACGTGGAACCACCACCCAAAAACGAACCTGGAGAATATGACCAGTCTAAACAACAACAACCTCATCCTCATCCTCAACAGCTTAATGCCCAATGA 1017 0.4444 MGRVKLEIKRIENSTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVMQRKEYLMSHHLSSFDPSSIQGIPTSFDNVGWLQDGSQNHAQIFDGSAPLDPLRDLSSTVYGSFSQGTSSNADPRGMGECHVSNPSDGTLQPWPQGYTLYPHHHIQHDMVGPDMPDMMPHAQVNIPITASHVEPPPKNEPGEYDQSKQQQPHPHPQQLNAQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02193 338 MobiDBLite consensus disorder prediction 319 338 - -
Phac8g02193 338 FunFam MADS-box transcription factor 41 13 92 - -
Phac8g02193 338 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 Coils Coil 119 153 - -
Phac8g02193 338 MobiDBLite consensus disorder prediction 306 338 - -
Phac8g02193 338 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Phac8g02193 338 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 311 - -
Phac8g02193 338 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phac8g02193 338 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Phac8g02193 338 MobiDBLite consensus disorder prediction 238 266 - -
Phac8g02193 338 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02193 Phac-Chr8 29549391 29556352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02193 1 306 Type I MADS-box Gene Family AT1G22130 58.280 1.69e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phac8g02193 SRF-TF 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02193 - - pvu:PHAVU_008G170400g 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phac8g02193 8 29549391 29556352 Phac8g02193 8 29549391 29556352 ECH