Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g02001 ATGGAATCCCAGAAAAGTCCATTAATAGATGACAGCTTATTTGATATTTTCCAAGATACGGAGTTTCGGGACACTGACTTTGGTGGAGGGGACCTCCATTCCATTTTGGAGAGCCTACAAGACTTGAAACATTTCCCCCCCATCAACAATGAAGCTGTTATTTTCCCAACTTCAAAAGGAAACGAGCAAAACTCAACAATGGAGTCCCAAAAGGTCTCCATATCTTTAAGTGCTCCACAACATTCTGAAACAGAGCCTGAAATCTCACCCAAAAGCAAGACAAAAAAGCTTCACCCCACCTTGCTAGAGGAACCACCGAAGGTGTCTCATATAACAGTGGAGCGCAACCGCAGGAAGCAAATGAATGAGAACTTCTCCGTATTGAGGTCACTTATGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAAGGAGTTGCAACAGCTGCAGCAATGCCTAGACGCAAAGAAACAAAGAAAACTTTACAGTGATGTACTAAGCCCTAGGCTAGTTTCAAGCACAAGGCCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTGCCCATTAGTCCAAGGACTCCACAGCCTGGCAGCCCTTACAAGCCCAGGTTGCAACCAGGTTACCTCTCCCCAACTATAGCCAACTCTCCCACTTCTTCAGCTTCTTCTTCCATCAACGACAATGTCAACGAGCTTGTTGCAAACTCCAAGTCTGTTATTGCCGATGTCGAGGTCAAGTTTTCAGGTCCACATGTTCTTCTGAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTGAGAATAATATCAGCTCTTGAAGACCTAGCACTCGAAATCCTCCATGTGAATATCAGCATTGCTGATGAAACCATGATCAACTCCTTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCCAAAGATCGCTTCCAGACTCCAGAACAAGCATCAGACCTCACCCTTCCCCTTTTTAG 1059 0.4495 MESQKSPLIDDSLFDIFQDTEFRDTDFGGGDLHSILESLQDLKHFPPINNEAVIFPTSKGNEQNSTMESQKVSISLSAPQHSETEPEISPKSKTKKLHPTLLEEPPKVSHITVERNRRKQMNENFSVLRSLMPSFYVKRGDQASIIEGVVDYIKELQQLQQCLDAKKQRKLYSDVLSPRLVSSTRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPRLQPGYLSPTIANSPTSSASSSINDNVNELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQALRIISALEDLALEILHVNISIADETMINSFTIKIGIECQLSAEELAQQIQQTFCQRSLPDSRTSIRPHPSPF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g02001 352 SMART finulus 111 162 IPR011598 GO:0046983
Phac8g02001 352 Coils Coil 149 169 - -
Phac8g02001 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 173 IPR036638 GO:0046983
Phac8g02001 352 Gene3D - 102 171 IPR036638 GO:0046983
Phac8g02001 352 Pfam Helix-loop-helix DNA-binding domain 107 157 IPR011598 GO:0046983
Phac8g02001 352 MobiDBLite consensus disorder prediction 76 97 - -
Phac8g02001 352 MobiDBLite consensus disorder prediction 188 216 - -
Phac8g02001 352 PANTHER TRANSCRIPTION FACTOR FAMA 13 333 IPR044283 GO:0003700|GO:0010052
Phac8g02001 352 MobiDBLite consensus disorder prediction 180 220 - -
Phac8g02001 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g02001 Phac-Chr8 26296657 26300595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g02001 15 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 47.458 9.45e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac8g02001 HLH 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g02001 K20558 - gmx:100809717 488.034