Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Phac8g01989 | ATGGAGATGGACAGCATTGACTGTGTGTCATTCTCTGATGGCATGGATGAGGATGAGATCCAACACCACACTCTGCATCCTCATCATCACTCTGAGTTTTCTTCTAACAAGCCTCGTAATGGCGGTGCTAATAGCAATAATGTTACGGGAGCCACCGCCATTTCTCCTGCAACCAGCGTTCATGAGTTGCTAGAATGCCCTGTTTGCACAAATTCAATGTACCCCCCAATTCACCAGTGCCACAATGGACACACATTGTGTTCCACTTGTAAAACAAGGGTGCACAATCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTTGAGTTACCTTGCAAGTACTACTCCCTTGGATGTCCCGAAATCTTTCCTTATTACAGCAAGCTCAAGCATGAGACAATATGCAATTTTAGACCATACAATTGTCCTTATGCTGGATCAGAGTGCTCTGTTGTTGGGGACATTCCCTTCCTTGTTGCACATTTGAGGGATGATCATAAGGTGGACATGCACACTGGTTGCACATTCAACCATCGTTATGTGAAGTCCAATCCTCGTGAAGTAGAGAATGCAACTTGGATGCTCACCGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTCGAAGCTTTCCAGCTTGGCATGGCTCCTGTTTACATGGCATTCCTTCGATTTATGGGTGATGAGAACGAGGCTCGTAACTACAGCTACAGCCTTGAAGTTGGGGCAAATGGCAGAAAACTCATTTGGGAGGGTACACCACGAAGTATTCGCGATAGCCACCGGAAAGTCAGAGATAGCCATGACGGTCTCATTATTCAACGAAACATGGCCTTATTTTTCTCTGGAGGTGATAAGAAGGAGCTGAAACTAAGAGTCACAGGAAGAATATGGAAGGAACAACAGAATCCAGATGCTGGGGTGTGCATACCAAATCTTTGCAGCTAA | 987 | 0.4539 | MEMDSIDCVSFSDGMDEDEIQHHTLHPHHHSEFSSNKPRNGGANSNNVTGATAISPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETICNFRPYNCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKEQQNPDAGVCIPNLCS* | 329 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Phac8g01989 | 328 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 175 | 307 | - | - | |
Phac8g01989 | 328 | Pfam | Seven in absentia protein family | 108 | 307 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Phac8g01989 | 328 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 173 | 307 | IPR008974 | GO:0005515 | |
Phac8g01989 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 118 | IPR013083 | - | |
Phac8g01989 | 328 | SUPERFAMILY | TRAF domain-like | 119 | 311 | - | - | |
Phac8g01989 | 328 | CDD | RING-HC_SIAHs | 64 | 102 | - | - | |
Phac8g01989 | 328 | SUPERFAMILY | RING/U-box | 48 | 108 | - | - | |
Phac8g01989 | 328 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 45 | 313 | - | - | |
Phac8g01989 | 328 | CDD | Sina | 180 | 308 | - | - | |
Phac8g01989 | 328 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 172 | IPR013083 | - | |
Phac8g01989 | 328 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 118 | 174 | - | - | |
Phac8g01989 | 328 | ProSiteProfiles | Zinc finger RING-type profile. | 66 | 102 | IPR001841 | - | |
Phac8g01989 | 328 | ProSiteProfiles | Zinc finger SIAH-type profile. | 119 | 179 | IPR013010 | GO:0008270 | |
Phac8g01989 | 328 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 11 | 117 | - | - | |
Phac8g01989 | 328 | MobiDBLite | consensus disorder prediction | 25 | 49 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Phac8g01989 | Phac-Chr8 | 26026243 | 26038169 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Phac8g01989 | 34 | 314 | C3H Transcription Factor Family | AT2G41980 | 76.512 | 9.91e-164 | 457 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Phac8g01989 | K04506 | - | cave:132180687 | 655.595 |