Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01980 ATGGAATCACCCAACTCTTCCCCCATTTTCCCACAATTCACCCTTGACACCAGCAAAAACAATAACCCTGACCACTTCATTGTCGAGGACCTCTTGGATTTCTCCAACGACGATGCTGTAATCGCCGACTCCATATTCGATTCTCTCCCCGTCAATTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCTTTCTCCGGCTACGACCCTCATACCATTCCCGACATTGGTAGCCGGAATCTCTCCGATGGTCATTTTTCCGGTGACCTATCCGTACCGTACGATGATATAGCAGAGCTAGAATGGCTTTCGAATTTCGTCGAGGAGTCTTTTTCCAGCGAGGACCTGCAGAAGATGCAGCTGATATCGGGCATGAATGCAAGAAACGACCACGTATCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAGCGGGTTTCACTCTGAGCCCACCAGAAACAACCCGATATTCAATTCGGAAGTGTCGGTTCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCCCCATGCAACTGGGCCTCGCGCCTCCTCGTCCTGTCCCCAACGACGTCGTCTTCAGACTCTGAGATCGTTGTTCCTGTCCCCACTCCTCCCTGCACAAAAAAGCCCGCAAAGGCAACACCAAGAAAGAAGGACAGCGGCGATGGCAGTGGAGGCGACGGACGAAGGTGCCTGCATTGCGCCACGGACAAGACACCACAGTGGCGAACCGGGCCAATGGGCCCAAAGACACTGTGTAACGCGTGTGGAGTGAGGTACAAGTCGGGGCGGCTGGTGCCCGAGTACCGGCCCGCGGCAAGCCCAACGTTTGTTCTGACAAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGTTGCGAAGACAAAAGGAGATGGTGCGGGCCCAGCAGCACCAGCAACAACAGTTCCTACAACACCATCACCATCAGAACATGCTGTTAGATGTATCCAACAGTGAAGATTACTTGGTCCACCAACACATGGGACCCGATTTCAGGCAGCTTATCTAG 1047 0.5473 MESPNSSPIFPQFTLDTSKNNNPDHFIVEDLLDFSNDDAVIADSIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPHTIPDIGSRNLSDGHFSGDLSVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVSKARGFHSEPTRSGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSDSEIVVPVPTPPCTKKPAKATPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHQNMLLDVSNSEDYLVHQHMGPDFRQLI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01980 348 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Phac8g01980 348 MobiDBLite consensus disorder prediction 197 235 - -
Phac8g01980 348 MobiDBLite consensus disorder prediction 141 181 - -
Phac8g01980 348 MobiDBLite consensus disorder prediction 150 166 - -
Phac8g01980 348 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Phac8g01980 348 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Phac8g01980 348 Gene3D - 233 321 IPR013088 GO:0006355|GO:0008270
Phac8g01980 348 MobiDBLite consensus disorder prediction 218 235 - -
Phac8g01980 348 PIRSF Txn_fac_GATA_plant 10 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phac8g01980 348 PANTHER GATA TRANSCRIPTION FACTOR 18 312 - -
Phac8g01980 348 FunFam GATA transcription factor 227 314 - -
Phac8g01980 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 295 - -
Phac8g01980 348 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Phac8g01980 348 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01980 Phac-Chr8 25827641 25829515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01980 22 348 C2C2-Gata Transcription Factor Family AT4G32890 50.147 2.90e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phac8g01980 GATA 3.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01980 - - gmx:100800146 528.48