Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01977 ATGTTGGATTACGAATGGAACACATCAATGATACTACTCGCCGGAAATGAAGGCGCTGGCGGCGAACCCGACCAAACGCGCCGGCAAATCTTCGACCACAACTTCGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACAGCCACCACTGGTTTCTCACATCACCACCCCTTCAACCCACCACAACAGCACCACCAGCAGGCCTTCTTGGACCCACGTGCCTACCAAAGCGCGTCCACCACTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTTTAGCCCCCTCCCACTGTGGGCTTGGACCTGGCTCCGGGCTTGGATTTCTGCTCATGTCCAAGTCTGAGGATGTCACTTCGCCCATGAACTTCGACGGCTCTGGTCATGGTCTCGGGCCTGGGCTTGGACTCAACCTCGGAGGCCGCACTTATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTCCAAGACCGTGGAATCGGTTTCCACGGTGTCGTCAAATTTGCCACGCTGTCAGGCAGAAGGATGTAATACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAAGTTTGTGAGTTCCACTCCAAGGCTGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGCCAACTCAAGACATTCACAAATCTCAGCCTTCTTCGGACAATGTTACATGGTCCTCGCCTGAATCTGGAGCTCAATCTTCCTCATCGCTGAAGGTGGCAGTGTCTCCCCCAGATTATTTCCAGCAAAGACCCAATCAAAATAGAGGCACTTGTTCAACATCATCTGGGTCATTGTTTTTCTCAAGTGGGACCAATTTGCATGGCTAA 978 0.5297 MLDYEWNTSMILLAGNEGAGGEPDQTRRQIFDHNFAMLTDPILHGSTPTATTGFSHHHPFNPPQQHHQQAFLDPRAYQSASTTSFSPPPSVLSLNPIPPLAPSHCGLGPGSGLGFLLMSKSEDVTSPMNFDGSGHGLGPGLGLNLGGRTYFAASNEDTLDRFYRSKTVESVSTVSSNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQDIHKSQPSSDNVTWSSPESGAQSSSSLKVAVSPPDYFQQRPNQNRGTCSTSSGSLFFSSGTNLHG* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01977 325 MobiDBLite consensus disorder prediction 260 313 - -
Phac8g01977 325 SUPERFAMILY SBT domain 179 258 IPR036893 GO:0003677|GO:0005634
Phac8g01977 325 Gene3D - 176 242 IPR036893 GO:0003677|GO:0005634
Phac8g01977 325 MobiDBLite consensus disorder prediction 244 313 - -
Phac8g01977 325 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 316 IPR044817 GO:0003677
Phac8g01977 325 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Phac8g01977 325 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Phac8g01977 325 Pfam SBP domain 181 254 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01977 Phac-Chr8 25694744 25698607 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01977 1 228 SBP-box Gene Family AT1G02065 40.977 2.80e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac8g01977 SBP 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01977 - - var:108328505 510.76