Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01975 ATGGAGTTCGGGGGGAACATCTTCTGCCTCGCCAACAGAGACCAAAATGGAAATACTAACGGTAACACTTTCGCTTGGGATTCATGGCAAACAACCACTTTTAATAATAACAACAACACTTCCAGGTTGGTCAACGCTTTCAACGCCCCCGTCACTGGGGTCACCGCGCCGGAGAGCTCACCAGCAAACCGCCCTGAGGCCTCGGGACTCGCCAGCGCTCTCATGTTCCTCCCTCAAAACGGAGGCGTTTTGCGTCACCGCCAGCACCAGCAGCAGCAGCAACAGCAGCATCCGTACGGTGGGGATGGGTCCCACGTGCACCCCGACCCACACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAACCGTTTCTTCTGCTGCTGCTTCTGCTGCTACTGCGGCTACTTTTGGCGGGGGGTTGGTGTTAGGGGATAAGAGAGGGAAAGGAGGGTATTCCGGCGGCGGTGCGGCGGTGAAGGGTGTGGGGTTGACGACGGCGACGGTGCCGAGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGGTGAACGCCAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGTAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTTTCAACAAGATGCAGTGCTGCATTGCGTGAATTGATAGCAGAAAACCGGGCAGCCATCATGGCAAGACAGTTTGTATCAGATAGAGATTGGCATATTCAGCACCATGCTATGGAAGACATGAAGGAGATCCAACCTGAGTCCACTTACTTCCCACAACAGATGTTTCCCCAGACACAGTGA 1038 0.5328 MEFGGNIFCLANRDQNGNTNGNTFAWDSWQTTTFNNNNNTSRLVNAFNAPVTGVTAPESSPANRPEASGLASALMFLPQNGGVLRHRQHQQQQQQQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVSSAAASAATAATFGGGLVLGDKRGKGGYSGGGAAVKGVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHHAMEDMKEIQPESTYFPQQMFPQTQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01975 345 MobiDBLite consensus disorder prediction 84 108 - -
Phac8g01975 345 MobiDBLite consensus disorder prediction 244 265 - -
Phac8g01975 345 Gene3D - 172 241 IPR036893 GO:0003677|GO:0005634
Phac8g01975 345 SUPERFAMILY SBT domain 178 259 IPR036893 GO:0003677|GO:0005634
Phac8g01975 345 Pfam SBP domain 180 253 IPR004333 GO:0003677
Phac8g01975 345 FunFam Squamosa promoter-binding-like protein 14 172 241 - -
Phac8g01975 345 ProSiteProfiles Zinc finger SBP-type profile. 177 254 IPR004333 GO:0003677
Phac8g01975 345 MobiDBLite consensus disorder prediction 84 100 - -
Phac8g01975 345 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 129 289 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01975 Phac-Chr8 25568464 25574436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01975 113 253 SBP-box Gene Family AT1G27370 51.064 4.75e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac8g01975 SBP 6.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01975 - - var:108327478 551.977