LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac8g01963	ATGAACACCAAAAGCATCACCTCAAATCCACCATGGATTCTCTTCACTACACTTTTTCTCTCGTCTTTCTCCCTCTCACTCTCCGATCCAAGAATCACCGAAGCAGGACTCTACTGTGGAACCACCAAGGCCCCTCTGAAAGCCAACTACATACCAAGTTTCACCAAGGAAATGGAGAGCATCTCGCAGTTGGTGACCAAACACAACTGGGGCACTCACGTTGTCAACATTTCAGGCTCGTCCATTCCAATTTATGGCTTTGCACAATGCTTCAAGGACCTCTCCAACACCGATTGCCTTCTCTGCTACGCCGCAAGCCGTACCAAGCTTCCACGCTGCCTACCTTCTGTCTCTGCGCGCATCTACCTTGATGGCTGCTTCTTGCGCTATGACAACTACAGCTTCTATGCGGAGGTTAGTGACCCTTTGAGGGATACAGTGAACTGCACCTCACAGCATGGGACGGTTGTTGATAAAACTGAGAGGTTGGAACTTGAGGAGAGCGTTGGAAGGGTAGTTGAGAGTGTGACCAACAGGGCTCTGGCAAAAGGTGGTGGCTTTGCTGTGGGAGAGGTTGAGGGGGTTTATGCATTGGCACAGTGCTGGAATACCATTGGGAATGATGGGTGTAGAGAGTGTTTGAGGAAAGCTGGGAAGGAGGTGAGAGGGTGCTTGCCAAAGAGGGATGGGAGGGCCTTGAATGCTGGCTGTTATTTGAGGTATTCAACAAATAAGTTCTACAATGAAGATGGCGATGCAGGTGGTAAAAATGGATTCTTAAGAAGAGGAGTCATAATCGCAGAAGTGTTAGCAGCAGCTGCAGTTTTAATGCTTACCCTCTCTGCCTCCTATGTAGCCTTCACAAAATTAACTAGGATAAAAAAAGAAAACAATAATCTTGGTCAGATTTCCTCTTCCATAAGCAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAAAAGGCCACAGATTATTTTAACTCTTCAAGGAAAATAGGCCAAGGTGGAGCTGGCTCAGTTTTCAAAGGTATTCTCCCAAATAAGAAAGTTATTGCGGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAACGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTATTGGGATGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTGCCCAAAAAGAGTTTAGACCAATTTATCTTCGAGAAAAACAGAACTCAGATTCTAAACTGGAAGCAGAGGTTTAATATCATTCTTGGAACTGCAGAGGGGCTTGCATATCTTCATGAAGGTACCAAAATAAGAATCATCCATCGAGATATCAAAAGCAGCAATGTTCTTCTGGACGAGAATCTCACTCCCAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGAGCTGATAAGTCCCATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATCAGAGGACAACTTACTGATAAAGCTGATGTGTATAGTTTTGGAGTACTTGTTCTTGAGGTTGTATGTGGGAGGAGGAACAATGTCTTCCGAGAGGACTCTGGCTCGCTTCTACAAACTTGGAAAATTATCATTTTGACACCAGGTTTGGAAACTTTACCGATCAAACACATTAACTGA	1677	0.4454	MNTKSITSNPPWILFTTLFLSSFSLSLSDPRITEAGLYCGTTKAPLKANYIPSFTKEMESISQLVTKHNWGTHVVNISGSSIPIYGFAQCFKDLSNTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYAEVSDPLRDTVNCTSQHGTVVDKTERLELEESVGRVVESVTNRALAKGGGFAVGEVEGVYALAQCWNTIGNDGCRECLRKAGKEVRGCLPKRDGRALNAGCYLRYSTNKFYNEDGDAGGKNGFLRRGVIIAEVLAAAAVLMLTLSASYVAFTKLTRIKKENNNLGQISSSISKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFKGILPNKKVIAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHEGTKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEVVCGRRNNVFREDSGSLLQTWKIIILTPGLETLPIKHIN*	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac8g01963	558	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	447	459	IPR008271	GO:0004672\|GO:0006468
	Phac8g01963	558	FunFam	Cysteine-rich receptor-like protein kinase 2	32	135	-	-
	Phac8g01963	558	SUPERFAMILY	Protein kinase-like (PK-like)	305	533	IPR011009	-
	Phac8g01963	558	Gene3D	Phosphorylase Kinase; domain 1	285	401	-	-
	Phac8g01963	558	FunFam	Cysteine-rich receptor-like protein kinase 2	292	401	-	-
	Phac8g01963	558	Pfam	Salt stress response/antifungal	164	243	IPR002902	-
	Phac8g01963	558	Pfam	Salt stress response/antifungal	53	133	IPR002902	-
	Phac8g01963	558	FunFam	Cysteine-rich receptor-like protein kinase 2	402	548	-	-
	Phac8g01963	558	ProSiteProfiles	Gnk2-homologous domain profile.	32	135	IPR002902	-
	Phac8g01963	558	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	85	541	-	-
	Phac8g01963	558	Gene3D	Transferase(Phosphotransferase) domain 1	402	552	-	-
	Phac8g01963	558	Gene3D	-	35	135	IPR038408	-
	Phac8g01963	558	Gene3D	-	147	246	IPR038408	-
	Phac8g01963	558	Pfam	Protein kinase domain	327	525	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g01963	558	ProSiteProfiles	Protein kinase domain profile.	326	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g01963	558	SMART	serkin_6	326	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac8g01963	558	ProSiteProfiles	Gnk2-homologous domain profile.	144	246	IPR002902	-
	Phac8g01963	558	FunFam	Cysteine-rich receptor-like protein kinase 3	147	246	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac8g01963	Phac-Chr8	25269416	25273497	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac8g01963	3	491	Receptor kinase-like Gene Family	AT5G40380	55.918	0.0	555

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Phac8g01963		Pkinase	2e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac8g01963	-		-	gmx:100790404	902.123