Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01935 ATGCTTCCACTGCAATTTGGCACGCGCCCTCTGTACCCTCCATCTCTGTTCCTGAGCAGCTCCAACGCTTGTTCCTCCTCTCGCATCCTCTACAACAACACAAACAACAAGGTCTACCTTGTTCGCTCCAAAGTGGGAACCCTCAACCTTAGGGTTTTCGCTGTGTCTGGCAACTCCTCTTACAAGATGAACCTCAACGAGTACCTCGTCACTCTCGAGAAGCCCCTCGGCATTCGATTCGCTCTAACCGCCGATGGCAAAATCATTGTCCACTCTCTCACCAAAGGGGGTAATGCGGAGAGGTCCAGGATAATTATGGTGGGCGACACATTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTCGTCGAGATTAAAGACGTTGGAAATACACAGAAGGTGCTAAATGAGCAAACAAGTTCTTTTAGTTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCTATTCAACTACTGCACAAGATGAGTGATCTCGAAATAGTGTTTAATAGAGGGCGAGTTCCTATTGTCACATGGAACCATACTCTATTGGCATCAAATTTACAATCATCTAGTGAGAGCAGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTCAAGCCAAATGCAAACAAGTTATTGGGCAACCAAAATCAACGTTCCATCACCCATGGTGAGAGAAACTTCTTTACTGAACACACACCACAAATTGCTTGTGTTTTTACTGAAGAAGTGTGTGGAGCTGGAGATTGGGGTCATGGAAATTTCCCACTTGAGGAGTATATTCAGGCTCTAGATCGTTCCAAGGATGAGATGTACTATAACCACTCTCTTGGTATGTGTTATAGTAAGATTACAGAGCAAATTTACGTGGGATCTTGTATACAAACAGAAGATGATGTAGAGACCTTGTCAAAAGTTGAGGGAATTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGCAAAATCGATCAATGAATCTTGTCAAAGAAATAATATTCTCATGATCAACTATCCTATTCGGGAGGGAGATTCTTATGATATGAGGAAAAAACTCCCATTTTGTGCGGGGCTTCTATTACGTTTGCTAAGGAAGAATCTTCGTGTTTTTGTTACTTGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCCTACCTCCATTGGATGACAGATGTTTCCCTTCATGCAGCATATACTTGGGTCACTGGGATGCACAATTGTAGACCTGACAGGCCGGCAATTGCATGGGCTACTTGGGATCTTATAGCAATGGTTGAAGATGGTGAACATGATGGACCTCCTACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGGTGAGGATGTAACTTTGGTGGGAGACTTTACCGGAAATTGGAAAGAACCAGTCAAGGCAAAGTTTCAAGGTGGATCAAGACATGAAGCAGAAGTTAAACTTGCACAAGGAAAGTATGTGCTAAAAGTTTACTATTTCTTTTATTCTGTAGATTAA 1527 0.4296 MLPLQFGTRPLYPPSLFLSSSNACSSSRILYNNTNNKVYLVRSKVGTLNLRVFAVSGNSSYKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVEIKDVGNTQKVLNEQTSSFSLVLERPTSPFPIQLLHKMSDLEIVFNRGRVPIVTWNHTLLASNLQSSSESSGNSGFLMFNSKFLKPNANKLLGNQNQRSITHGERNFFTEHTPQIACVFTEEVCGAGDWGHGNFPLEEYIQALDRSKDEMYYNHSLGMCYSKITEQIYVGSCIQTEDDVETLSKVEGITAVLNFQSGTEAENWGINAKSINESCQRNNILMINYPIREGDSYDMRKKLPFCAGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHNCRPDRPAIAWATWDLIAMVEDGEHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPVKAKFQGGSRHEAEVKLAQGKYVLKVYYFFYSVD* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01935 508 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 273 420 IPR029021 -
Phac8g01935 508 Gene3D Protein tyrosine phosphatase superfamily 272 443 IPR029021 -
Phac8g01935 508 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 275 441 - -
Phac8g01935 508 Gene3D Immunoglobulins 444 508 IPR013783 -
Phac8g01935 508 Pfam Dual specificity phosphatase, catalytic domain 291 412 IPR000340 GO:0008138|GO:0016311
Phac8g01935 508 CDD E_set_AMPKbeta_like_N 449 499 - -
Phac8g01935 508 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 445 IPR020422 GO:0006470|GO:0008138
Phac8g01935 508 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 499 - -
Phac8g01935 508 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203
Phac8g01935 508 SUPERFAMILY PDZ domain-like 72 164 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01935 Phac-Chr8 24329652 24343047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01935 134 499 Protein tyrosine phosphatase (PTP) family AT3G01510 68.033 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01935 - - gmx:100814503 874.004