Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01934 ATGCAAGGGAATAAGTGTGCAGCATGCTTCAGGCAGTTCAACAAACTGGAGCACCTAGTGGAGCACATGAGGATCTCATACCATTCGGTTCATGAGCCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAGCAGGAATGCAGAGATATATTTTCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGACAGCCCTAATACTCGCAGGATTCACCAAGAAAAATGCCAACACTCTGCAACAAACGCTGGAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGGCCATTAGTGGTGGAGCAAGAGGACCACAAGTAGTCGCATTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTCTGTGGAAGAGTGTGCTTAACCGATGAGCATGAGAACATAATATTCCATTCTTATGTGAAGCCACCAATTCCTGTTACAAACTACAGGTATGAGACAACAGGCATTAGACCAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAAAGGAGGATTCAAGACTTTCTTTGCAACGGTGAACCTATGTGGACAATTCGTGCAAGAGGAGGAAGAGCAAGGATTCTTGTGGGTCATGGTTTGGATCATGACCTTGAATGTTTGCAAATAGAATATCGAACAGAAAAAATAAGGGACACTGCAAAATACCCTCCTCTGATGAAAACGAGCAAGCTCAGCAACTCCCTTAAGTACTTAACGCAAACATATCTTGGGTATGACATTCAAGTTGGAATTCAGGATCCTTATGATGACTGTGTTGCAACTATGAGACTCTACATGAGAATGAGATCCCAAGTACACAGAACACAGGATTATCCTTTGGTTTCTGATCCACAGAACAGAAACAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTGGAAGTATCAAGGTCTGACTACTATTGCTGGTGCTTGGATTCCTTGTATAATCCCTGA 1044 0.4301 MQGNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKQECRDIFSYRGCKFCLKVFDSPNTRRIHQEKCQHSATNAGIIGRFSNLGLRDNLAISGGARGPQVVALACKMVGGGSDGSLDLCGRVCLTDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRARGGRARILVGHGLDHDLECLQIEYRTEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQVGIQDPYDDCVATMRLYMRMRSQVHRTQDYPLVSDPQNRNNFASWRQSELERMTPEQMLEVSRSDYYCWCLDSLYNP* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01934 347 Gene3D - 120 305 IPR036397 GO:0003676
Phac8g01934 347 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 9 337 IPR047021 GO:0004527
Phac8g01934 347 FunFam RNA exonuclease 4 119 306 - -
Phac8g01934 347 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Phac8g01934 347 SMART c2h2final6 68 92 IPR013087 -
Phac8g01934 347 SMART c2h2final6 4 28 IPR013087 -
Phac8g01934 347 SMART c2h2final6 33 53 IPR013087 -
Phac8g01934 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 33 IPR013087 -
Phac8g01934 347 Pfam Exonuclease 146 286 IPR013520 -
Phac8g01934 347 SMART exoiiiendus 122 296 IPR013520 -
Phac8g01934 347 CDD REX4_like 124 287 IPR037431 GO:0006364|GO:0008408
Phac8g01934 347 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Phac8g01934 347 SUPERFAMILY Ribonuclease H-like 140 292 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01934 Phac-Chr8 24266839 24269193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01934 4 344 C2H2 Transcription Factor Family AT3G27970 74.561 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01934 - - aprc:113862359 692.575