Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac8g01924 ATGCCTCCAAATGTAGAGTATTTGTCGTCTGTGGCAAAACAAGCGGAGCAGCTTCGAGTGGTCGGCAACAACTACTTCAAGAAAGAGCGTTTTGGAGCTTCCATTGATGCTTACACTGAGGCAATTGCACTGTGCCCTGATGTTCCGGTGTATTGGACCAACCGTGCTCTCTGCCATCTCAAGCGCAATGATTGGACCAGAGTTGAGGAAGACTCTCGTCAAGCTATGAAGCTTGACAACAATTTGGTTAAGGCCCACTATATGTTAGGTCTTTCAATGGTACAGAGACAAGAGTTTGCTAAAGGAATCTTAGAATTGAAAACGGCTTTGGATCTTGATAGAGGTTCCCATCCTAAGGGCCAAATGGTAGAGGAAATATGGCTGGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATATATTAAGTGGTCATGGGAACTACAGTGCTTGAAAGAAGCTTGTGAGTATGCTCTAAAGGAAAAACATTTTCTCGAAGTCCCCCACATGGAAGGATTTGTAGAAGATGATACTGCCCATTTAGAACAATTAGAGGCTTTAGGAAGAGTGTTTGATAAAGTTGCAGAAAATGACATGCCTACCGAGGTGCCAGATTATCTGTGCTGTAGAATCACACTTGATATTTTTTGTGATCCTGTCATCACCCCAAGTGGCCTTACATACGAGAAGACAGTAATCATTGATCATCTTGAGAAGGTGGGTATGTTTGATCCAGTCACTAGAGATCCTCTTGCTCCATCACAGCTAATACCAAACCTAGCCATAAAGCAAGCAGTTGAAGCATTCTTGAATAAACATGGGTGGGCATACAAAGATATATTAACAAAAAGCTTTTAG 861 0.4228 MPPNVEYLSSVAKQAEQLRVVGNNYFKKERFGASIDAYTEAIALCPDVPVYWTNRALCHLKRNDWTRVEEDSRQAMKLDNNLVKAHYMLGLSMVQRQEFAKGILELKTALDLDRGSHPKGQMVEEIWLELAKAKYLEWEHSYIKWSWELQCLKEACEYALKEKHFLEVPHMEGFVEDDTAHLEQLEALGRVFDKVAENDMPTEVPDYLCCRITLDIFCDPVITPSGLTYEKTVIIDHLEKVGMFDPVTRDPLAPSQLIPNLAIKQAVEAFLNKHGWAYKDILTKSF* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac8g01924 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 IPR045200 GO:0000209|GO:0061630
Phac8g01924 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Phac8g01924 286 SUPERFAMILY TPR-like 12 135 IPR011990 GO:0005515
Phac8g01924 286 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515
Phac8g01924 286 SMART tpr_5 15 48 IPR019734 GO:0005515
Phac8g01924 286 SMART tpr_5 49 82 IPR019734 GO:0005515
Phac8g01924 286 SMART tpr_5 83 116 IPR019734 GO:0005515
Phac8g01924 286 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Phac8g01924 286 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Phac8g01924 286 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Phac8g01924 286 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Phac8g01924 286 SUPERFAMILY RING/U-box 197 280 - -
Phac8g01924 286 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac8g01924 Phac-Chr8 18555727 18559873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac8g01924 15 279 U-box Gene Family AT3G07370 63.158 1.30e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac8g01924 K09561 - gmx:100796519 428.328