Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac8g01907 | ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCAACTGGAGGCAAGAAGAAGGCGTGGAGAAAGAAGAGAAAGTATGAGCTTGGTCGCCAATCAGCCAACACCAAGTTATCAAGCAACAAGACAATTAGGAGGATTCGTGTTAGAGGTGGCAATGTAAAATGGAGGGCATTGAGGTTGGACACTGGAAATTACTCATGGGGTAGTGAGGCAGTAACCCGCAAGACTCGTATCCTAGATGTTGTTTACAATGCCTCAAACAATGAGCTTGTGAGAACTCAGACATTGGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCTCCTTTCAAGCAGTGGTACCTTCAGCACTATGGTGTTGAAATTGGCAGAAAAAAGAAAGCAGCATCCAAGAAGGACTCTACTGAGGAGGCTGATGCTGCTGCTGCTGAAGAAACTAAGAAAAGTAACCATGTGCAGAGGAAACTTGAGAAGCGCCAGAAAGATCGCAAACTTGATGCCCACATTGAAGAACAATTTGCTGGTGGCAGATTGTTGGCATGTATTTCTTCTCGCCCTGGACAATGTGGCAGGGCTGATGGGTACATTCTGGAAGGGAAGGAGCTGGAGTTTTACATGAAGAAACTTCAGAAGAAGAAGGGAAAGGGTGCTGCTTAA | 657 | 0.4597 | MGISRDSMHKRRATGGKKKAWRKKRKYELGRQSANTKLSSNKTIRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKAASKKDSTEEADAAAAEETKKSNHVQRKLEKRQKDRKLDAHIEEQFAGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac8g01907 | 218 | FunFam | 40S ribosomal protein S8 | 162 | 215 | - | - | |
| Phac8g01907 | 218 | MobiDBLite | consensus disorder prediction | 125 | 163 | - | - | |
| Phac8g01907 | 218 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Phac8g01907 | 218 | FunFam | 40S ribosomal protein S8 | 32 | 161 | - | - | |
| Phac8g01907 | 218 | Gene3D | - | 162 | 215 | - | - | |
| Phac8g01907 | 218 | Gene3D | - | 32 | 161 | - | - | |
| Phac8g01907 | 218 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
| Phac8g01907 | 218 | FunFam | 40S ribosomal protein S8 | 109 | 176 | - | - | |
| Phac8g01907 | 218 | NCBIfam | ribosomal protein eS8 | 1 | 199 | IPR001047 | GO:0003735|GO:0005840|GO:0006412 | |
| Phac8g01907 | 218 | CDD | Ribosomal_S8e_like | 5 | 197 | - | - | |
| Phac8g01907 | 218 | Pfam | Ribosomal protein S8e | 5 | 197 | IPR022309 | - | |
| Phac8g01907 | 218 | PANTHER | 40S RIBOSOMAL PROTEIN S8 | 1 | 215 | IPR001047 | GO:0003735|GO:0005840|GO:0006412 | |
| Phac8g01907 | 218 | ProSitePatterns | Ribosomal protein S8e signature. | 11 | 30 | IPR018283 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac8g01907 | Phac-Chr8 | 18284054 | 18286548 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac8g01907 | 1 | 206 | Cytoplasmic Ribosomal Protein Gene Family | AT5G59240 | 83.495 | 8.17e-127 | 355 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac8g01907 | K02995 | - | gmx:100500112 | 377.867 |